Evidence map›Paper›PMID 37727796›Full record

ArticleFrontiers in bioinformatics2023

The origin of eukaryotes and rise in complexity were synchronous with the rise in oxygen.

Jack M Craig, Sudhir Kumar, S Blair Hedges

Abstract read
In one paragraph

Article in Frontiers in bioinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Eukaryogenesis From FECA to LECA: Radical Steps Along the Way.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  7. Review
  8. The hard steps model and whole Earth-system transitions.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  9. DPANN Archaea and CPR Bacteria: insights into early cellular evolution?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  10. Review
  11. Article
  12. Completing a molecular timetree of Afrotheria.Frontiers in bioinformatics · 2025
    Article
  13. Challenges in Assembling the Dated Tree of Life.Genome biology and evolution · 2024
    Article
  14. Article
  15. Article
  16. Completing a molecular timetree of primates.Frontiers in bioinformatics · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jack M CraigCenter for Biodiversity, Temple University, Philadelphia, PA, United States.
Sudhir KumarCenter for Biodiversity, Temple University, Philadelphia, PA, United States.
S Blair HedgesCenter for Biodiversity, Temple University, Philadelphia, PA, United States.

Funding

Methods For Evolutionary Genomics AnalysisR35GM139540 · NIGMS · TEMPLE UNIV OF THE COMMONWEALTH · PI Sudhir Kumar · 2021 to 2026
$2.9M
Inferring molecular evolutionary rates and divergence datesR01GM126567 · NIGMS · TEMPLE UNIV OF THE COMMONWEALTH · PI KUMAR, SUDHIR · 2018 to 2020
$951k
NIGMS NIH HHS R01 GM126567NIGMS NIH HHS R35 GM139540
6 · The paper itself

Abstract

The origin of eukaryotes was among the most important events in the history of life, spawning a new evolutionary lineage that led to all complex multicellular organisms. However, the timing of this event, crucial for understanding its environmental context, has been difficult to establish. The fossil and biomarker records are sparse and molecular clocks have thus far not reached a consensus, with dates spanning 2.1-0.91 billion years ago (Ga) for critical nodes. Notably, molecular time estimates for the last common ancestor of eukaryotes are typically hundreds of millions of years younger than the Great Oxidation Event (GOE, 2.43-2.22 Ga), leading researchers to question the presumptive link between eukaryotes and oxygen. We obtained a new time estimate for the origin of eukaryotes using genetic data of both archaeal and bacterial origin, the latter rarely used in past studies. We also avoided potential calibration biases that may have affected earlier studies. We obtained a conservative interval of 2.2-1.5 Ga, with an even narrower core interval of 2.0-1.8 Ga, for the origin of eukaryotes, a period closely aligned with the rise in oxygen. We further reconstructed the history of biological complexity across the tree of life using three universal measures: cell types, genes, and genome size. We found that the rise in complexity was temporally consistent with and followed a pattern similar to the rise in oxygen. This suggests a causal relationship stemming from the increased energy needs of complex life fulfilled by oxygen.

Indexed as

biological complexitydatingeukaryotesgreat oxidation eventmolecular clockphylogenyprokaryotestree of life

Identifiers

PMID37727796
PMCPMC10505794

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.