Evidence map›Paper›PMID 37726478›Full record

ArticleBritish journal of cancer2023

Characterizing the mutational burden, DNA methylation landscape, and proteome of germ cell tumor-related somatic-type malignancies to identify the tissue-of-origin, mechanisms of therapy resistance, and druggable targets.

Felix Bremmer, Pailin Pongratanakul, Margaretha Skowron, Yue Che, Annika Richter, Stefan Küffer, Kirsten Reuter-Jessen, Hanibal Bohnenberger, Stella Pauls, Catena Kresbach and 5 more

Open access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
9.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

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  14. Role of Epigenetics for the Efficacy of Cisplatin.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Felix BremmerInstitute of Pathology, University Medical Center Goettingen, Goettingen, Germany.ORCID 0000-0003-0367-6527
Pailin PongratanakulDepartment of Urology, Urological Research Laboratory, Translational UroOncology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.
Margaretha SkowronDepartment of Urology, Urological Research Laboratory, Translational UroOncology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.
Yue CheDepartment of Urology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.
Annika RichterInstitute of Pathology, University Medical Center Goettingen, Goettingen, Germany.
Stefan KüfferInstitute of Pathology, University Medical Center Goettingen, Goettingen, Germany.
Kirsten Reuter-JessenInstitute of Pathology, University Medical Center Goettingen, Goettingen, Germany.
Hanibal BohnenbergerInstitute of Pathology, University Medical Center Goettingen, Goettingen, Germany.ORCID 0000-0003-1038-1030
Stella PaulsMolecular Proteomics Laboratory (MPL), Biological and Medical Research Centre (BMFZ), Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.
Catena KresbachInstitute of Neuropathology, University Hospital Hamburg-Eppendorf, Hamburg, Germany.
Ulrich SchüllerInstitute of Neuropathology, University Hospital Hamburg-Eppendorf, Hamburg, Germany.ORCID 0000-0002-8731-1121
Kai StühlerMolecular Proteomics Laboratory (MPL), Biological and Medical Research Centre (BMFZ), Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.
Philipp StröbelInstitute of Pathology, University Medical Center Goettingen, Goettingen, Germany.
Peter AlbersDepartment of Urology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.ORCID 0000-0002-1747-9615
Daniel NettersheimDepartment of Urology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany. Daniel.Nettersheim@med.uni-duesseldorf.de.ORCID 0000-0002-4483-845X
Düsseldorf University Hospital · DEUniversität Hamburg · DE

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) NE 1861/8-1Wilhelm Sander-Stiftung (Wilhelm Sander Foundation) 2016.042.1 /.2 /.3
6 · The paper itself

Abstract

backgroundGerm cell tumors (GCT) might undergo transformation into a somatic-type malignancy (STM), resulting in a cell fate switch to tumors usually found in somatic tissues, such as rhabdomyosarcomas or adenocarcinomas. STM is associated with a poor prognosis, but the molecular and epigenetic mechanisms triggering STM are still enigmatic, the tissue-of-origin is under debate and biomarkers are lacking.

methodsTo address these questions, we characterized a unique cohort of STM tissues on mutational, epigenetic and protein level using modern and high-throughput methods like TSO assays, 850k DNA methylation arrays and mass spectrometry. RESULTS AND

conclusionsFor the first time, we show that based on DNA methylation and proteome data carcinoma-related STM more closely resemble yolk-sac tumors, while sarcoma-related STM resemble teratoma. STM harbor mutations in FGF signaling factors (FGF6/23, FGFR1/4) highlighting the corresponding pathway as a therapeutic target. Furthermore, STM utilize signaling pathways, like AKT, FGF, MAPK, and WNT to mediate molecular functions coping with oxidative stress, toxin transport, DNA helicase activity, apoptosis and the cell cycle. Collectively, these data might explain the high therapy resistance of STM. Finally, we identified putative novel biomarkers secreted by STM, like EFEMP1, MIF, and DNA methylation at specific CpG dinucleotides.

Indexed as

Neoplasms, Germ Cell and EmbryonalTeratomaBiomarkersDNA MethylationExtracellular Matrix ProteinsHumansProteomeBiomarkersEFEMP1 protein, humanExtracellular Matrix ProteinsProteome

Identifiers

PMID37726478
PMCPMC10645790
OpenAlexW4386861935

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.