Evidence map›Paper›PMID 37723252›Full record

ArticleNature medicine2023

Longitudinal genomic surveillance of carriage and transmission of Clostridioides difficile in an intensive care unit.

Arianna Miles-Jay, Evan S Snitkin, Michael Y Lin, Teppei Shimasaki, Michael Schoeny, Christine Fukuda, Thelma Dangana, Nicholas Moore, Sarah E Sansom, Rachel D Yelin and 7 more

Open access · hybridAbstract read
In one paragraph

Article in Nature medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 2 pooled it
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 2 syntheses or guidelines pooled it, 52 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Review
  5. The prevalence and molecular epidemiology ofEmerging microbes & infections · 2026
    Observational
  6. Review
  7. Early-life colonization withScience (New York, N.Y.) · 2026
    Article
  8. Article
  9. Optimized Surveillance Testing for ToxigenicmedRxiv : the preprint server for health sciences · 2026
    Article
  10. Evaluation of endoscopic processing on the potential forInfection prevention in practice · 2026
    Article
  11. Association betweenmedRxiv : the preprint server for health sciences · 2026
    Article
  12. Open forum infectious diseases · 2026
    Article
  13. Article
  14. Article
  15. Review
  16. Clostridioides difficile pathogenesis and control.Nature reviews. Microbiology · 2026
    Review
  17. Comparative genomic analysis ofMicrobial genomics · 2026
    Article
  18. Clinical and molecular epidemiology ofFrontiers in microbiology · 2026
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Arianna Miles-JayDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Evan S SnitkinDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA. esnitkin@umich.edu.ORCID http://orcid.org/0000-0001-8409-278X
Michael Y LinDivision of Infectious Diseases, Department of Medicine, Rush University Medical Center, Chicago, IL, USA.
Teppei ShimasakiDivision of Infectious Diseases, Department of Medicine, Rush University Medical Center, Chicago, IL, USA.
Michael SchoenyDivision of Infectious Diseases, Department of Medicine, Rush University Medical Center, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-3066-708X
Christine FukudaDivision of Infectious Diseases, Department of Medicine, Rush University Medical Center, Chicago, IL, USA.
Thelma DanganaDivision of Infectious Diseases, Department of Medicine, Rush University Medical Center, Chicago, IL, USA.
Nicholas MooreDivision of Infectious Diseases, Department of Medicine, Rush University Medical Center, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-9734-8905
Sarah E SansomDivision of Infectious Diseases, Department of Medicine, Rush University Medical Center, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-1924-8941
Rachel D YelinDivision of Infectious Diseases, Department of Medicine, Rush University Medical Center, Chicago, IL, USA.
Pamela BellDivision of Infectious Diseases, Department of Medicine, Rush University Medical Center, Chicago, IL, USA.
Krishna RaoDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA.
Micah KeidanDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA.
Alexandra StandkeDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA.
Christine BassisDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA.
Mary K HaydenDivision of Infectious Diseases, Department of Medicine, Rush University Medical Center, Chicago, IL, USA.
Vincent B YoungDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0003-3687-2364
Rush University Medical Center · USUniversity of Michigan · US

Funding

Systems biology of Clostridium difficile infectionU01AI124255 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHLOSS, PATRICK DAVID, YOUNG, VINCENT B · 2016 to 2020
$9.8M
Molecular Mechanisms of Microbial Pathogenesis Training ProgramT32AI007528 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARRUTHERS, VERNON BRUCE · 1998 to 2024
$6.8M
NCEZID CDC HHS U54 CK000481NCEZID CDC HHS U54 CK000607NIAID NIH HHS T32 AI007528NIAID NIH HHS U01 AI124255
6 · The paper itself

Abstract

Despite enhanced infection prevention efforts, Clostridioides difficile remains the leading cause of healthcare-associated infections in the United States. Current prevention strategies are limited by their failure to account for patients who carry C. difficile asymptomatically, who may act as hidden reservoirs transmitting infections to other patients. To improve the understanding of asymptomatic carriers' contribution to C. difficile spread, we conducted admission and daily longitudinal culture-based screening for C. difficile in a US-based intensive care unit over nine months and performed whole-genome sequencing on all recovered isolates. Despite a high burden of carriage, with 9.3% of admissions having toxigenic C. difficile detected in at least one sample, only 1% of patients culturing negative on admission to the unit acquired C. difficile via cross-transmission. While patients who carried toxigenic C. difficile on admission posed minimal risk to others, they themselves had a 24-times greater risk for developing a healthcare-onset C. difficile infection than noncarriers. Together, these findings suggest that current infection prevention practices can be effective in preventing nosocomial cross-transmission of C. difficile, and that decreasing C. difficile infections in hospitals further will require interventions targeting the transition from asymptomatic carriage to infection.

Indexed as

Clostridioides difficileClostridium InfectionsClostridioidesGenomicsHumansIntensive Care UnitsUnited States

Identifiers

PMID37723252
PMCPMC10579090
OpenAlexW4386826856

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.