Evidence map›Paper›PMID 37722062›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Causal ALS genes impact the MHC class II antigen presentation pathway.

Binkai Chi, Muhammet M Öztürk, Christina L Paraggio, Claudia E Leonard, Maria E Sanita, Mahtab Dastpak, Jeremy D O'Connell, Jordan A Coady, Jiuchun Zhang, Steven P Gygi and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Linking ALS mutations to the disruption of the MHC-II pathway.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Binkai ChiDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.
Muhammet M ÖztürkDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.
Christina L ParaggioDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.
Claudia E LeonardDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.
Maria E SanitaDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.
Mahtab DastpakDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.
Jeremy D O'ConnellDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.
Jordan A CoadyDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.
Jiuchun ZhangHarvard Medical School Cell Biology Initiative for Genome Editing and Neurodegeneration, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.
Steven P GygiDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.
Rodrigo Lopez-GonzalezDepartment of Neurosciences Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44196.ORCID 0000-0002-5480-6312
Shanye YinDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY 10461.
Robin ReedDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.

Funding

New Sample Multiplexing Technologies to Identify Chemical Probes and Illuminate Ubiquitin BiologyR01GM067945 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI GYGI, STEVEN P · 2003 to 2024
$10.5M
RNA Processing Machines in Biology and DiseaseR35GM122524 · NIGMS · HARVARD MEDICAL SCHOOL · PI MOAZED, DANESH · 2017 to 2023
$4.1M
NIGMS NIH HHS R01 GM067945NIGMS NIH HHS R35 GM122524
6 · The paper itself

Abstract

Mutations in RNA/DNA-binding proteins cause amyotrophic lateral sclerosis (ALS), but the underlying disease mechanisms remain unclear. Here, we report that a set of ALS-associated proteins, namely FUS, EWSR1, TAF15, and MATR3, impact the expression of genes encoding the major histocompatibility complex II (MHC II) antigen presentation pathway. Both subunits of the MHC II heterodimer, HLA-DR, are down-regulated in ALS gene knockouts/knockdown in HeLa and human microglial cells, due to loss of the MHC II transcription factor CIITA. Importantly, hematopoietic progenitor cells (HPCs) derived from human embryonic stem cells bearing the FUS

Indexed as

Amyotrophic Lateral SclerosisAntigen PresentationGenes, MHC Class IIHumansMajor Histocompatibility ComplexMotor NeuronsNuclear Matrix-Associated ProteinsRNA-Binding ProteinsMATR3 protein, humanNuclear Matrix-Associated ProteinsRNA-Binding ProteinsALSC9ORF72FUSMHC II

Identifiers

PMID37722062
PMCPMC10523463

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.