Evidence map›Paper›PMID 37722039›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

SETD2 safeguards the genome against isochromosome formation.

Frank M Mason, Emily S Kounlavong, Anteneh T Tebeje, Rashmi Dahiya, Tiffany Guess, Abid Khan, Logan Vlach, Stephen R Norris, Courtney A Lovejoy, Ruhee Dere and 5 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Frank M MasonDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232.ORCID 0000-0003-1338-494X
Emily S KounlavongDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232.
Anteneh T TebejeDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232.
Rashmi DahiyaDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Tiffany GuessDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232.
Abid KhanDepartment of Biochemistry and Biophysics, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
Logan VlachDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232.
Stephen R NorrisDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232.ORCID 0000-0001-6545-9814
Courtney A LovejoyDepartment of Biochemistry, Vanderbilt University, Nashville, TN 37232.ORCID 0000-0001-9178-5226
Ruhee DereCenter for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030.
Brian D StrahlDepartment of Biochemistry and Biophysics, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.ORCID 0000-0002-4947-6259
Ryoma OhiDepartment of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0001-9841-134X
Peter LyDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0001-8946-7069
Cheryl Lyn WalkerCenter for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030.
W Kimryn RathmellDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232.ORCID 0000-0002-4984-0225
Vanderbilt University Medical Center · USBaylor College of Medicine · USThe University of Texas Southwestern Medical Center · USUniversity of North Carolina at Chapel Hill · USUniversity of Michigan · USVanderbilt University · US

Funding

MULTIDISCIPLINARY BASIC RESEARCH TRAINING IN CANCERT32CA009592 · NCI · VANDERBILT UNIVERSITY · PI Justin M Balko, Julie A Rhoades (Sterling) · 1987 to 2026
$10.4M
A New Target for Chromatin Remodeler Defects in CancerR35CA231993 · NCI · BAYLOR COLLEGE OF MEDICINE · PI WALKER, CHERYL L. · 2018 to 2024
$6.2M
Mechanisms of chromatin and transcriptional regulationR35GM126900 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian D Strahl · 2018 to 2026
$5.5M
Regulation of microtubule dynamics during cell divisionR01GM086610 · NIGMS · VANDERBILT UNIVERSITY · PI OHI, RYOMA · 2010 to 2023
$4.5M
UNC Integrated Translational Oncology Program (UNC-iTOP)T32CA244125 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WILLIAM Y. KIM, Jen Jen Yeh · 2019 to 2026
$3.9M
Convergent Drivers of Tumor Evolution at the Mitotic SpindleR01CA275082 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ruhee Dere, Frank M Mason · 2022 to 2026
$2.8M
Methyltransferase Contributions to Genomic Stability and CancerR01CA203012 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RATHMELL, WENDY KIMRYN, WALKER, CHERYL L. · 2016 to 2020
$2.2M
NCI NIH HHS R01 CA203012NCI NIH HHS R01 CA275082NCI NIH HHS R35 CA231993NCI NIH HHS T32 CA009592NCI NIH HHS T32 CA244125NIGMS NIH HHS R01 GM086610NIGMS NIH HHS R35 GM126900
6 · The paper itself

Abstract

Isochromosomes are mirror-imaged chromosomes with simultaneous duplication and deletion of genetic material which may contain two centromeres to create isodicentric chromosomes. Although isochromosomes commonly occur in cancer and developmental disorders and promote genome instability, mechanisms that prevent isochromosomes are not well understood. We show here that the tumor suppressor and methyltransferase SETD2 is essential to prevent these errors. Using cellular and cytogenetic approaches, we demonstrate that loss of SETD2 or its epigenetic mark, histone H3 lysine 36 trimethylation (H3K36me3), results in the formation of isochromosomes as well as isodicentric and acentric chromosomes. These defects arise during DNA replication and are likely due to faulty homologous recombination by RAD52. These data provide a mechanism for isochromosome generation and demonstrate that SETD2 and H3K36me3 are essential to prevent the formation of this common mutable chromatin structure known to initiate a cascade of genomic instability in cancer.

Indexed as

IsochromosomesCentromereChromosome AberrationsCytogeneticsDNA ReplicationGenomic InstabilityHistone-Lysine N-MethyltransferaseHumansHistone-Lysine N-MethyltransferaseSETD2 protein, humanchromosomeepigeneticsintratumoral heterogeneityisochromosomemitosis

Identifiers

PMID37722039
PMCPMC10523680
OpenAlexW4386824150

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.