ArticleScientific data2023
Whole genomes from bacteria collected at diagnostic units around the world 2020.
Abstract readDataset
In one paragraph
Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
7 citing papers in PubMed.
- Article
- Contrasting pH optima of β-lactamases CTX-M and CMY influenceApplied and environmental microbiology · 2026Article
- Genetic population structure of Haemophilus influenzae at local and global scales.Nature microbiology · 2025Article
- Comparative genomics of endemicmSphere · 2025Article
- Assembly-free typing of Nanopore and Illumina data through proximity scoring with KMA.NAR genomics and bioinformatics · 2025Article
- Complete genome sequences ofMicrobiology resource announcements · 2024Article
- Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes.Frontiers in microbiology · 2024Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
78 authors.
Sidsel NagNational Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark. jassd_nf@hotmail.com.ORCID http://orcid.org/0000-0002-3271-7597
Gunhild LarsenNational Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
Judit SzarvasNational Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.ORCID http://orcid.org/0000-0002-0720-3017
Laura Elmlund Kohl BirkedahlNational Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
Gábor Máté GulyásNational Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
Wojchiech Jakub CiokNational Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
Timmie Mikkel LagermannNational Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
Silva TafajMicrobiology Department, University Hospital "Shefqet Ndroqi", Rruga Dr. Shefqet Ndroqi. Sauk, Tirana, 1044, Albania.ORCID http://orcid.org/0000-0003-3777-0095
Susan BradburyMicrobiology Department, Canberra Hospital, Gilmore Cresent, Garran, 2605, Australian Capital Territory, Australia.
Peter CollignonMicrobiology Department, Canberra Hospital, Gilmore Cresent, Garran, 2605, Australian Capital Territory, Australia.
Denise DaleyDepartment of Microbiology, PathWest Laboratory Medicine, Fiona Stanley Hospital, 9 Robin Warren Drive, Murdoch, 6150, Western Australia, Australia.
Victorien DougnonResearch Unit in Applied Microbiology and Pharmacology of Natural Substances, Polytechnic School of Abomey-Calavi, University of Abomey-Calavi, 01 PO Box, Abomey-Calavi, 2009, Cotonou, Benin.
Kafayath FabiyiResearch Unit in Applied Microbiology and Pharmacology of Natural Substances, Polytechnic School of Abomey-Calavi, University of Abomey-Calavi, 01 PO Box, Abomey-Calavi, 2009, Cotonou, Benin.
Boubacar CoulibalyDepartment of Laboratory, Nouna Health Research Centre, Rue Namory Keita, Nouna, Burkina Faso.
René DembéléTraining and Research Unit in Applied Sciences and Technologies/Biochemistry-microbiology, University of Dedougou, Dedougou, 176, Boucle du Mouhoun, Burkina Faso.
Georgette NikiemaTraining and Research Unit in Applied Sciences and Technologies/Biochemistry-microbiology, University of Dedougou, Dedougou, 176, Boucle du Mouhoun, Burkina Faso.
Natama MagloireClinical Research Unit of Nanoro, National Institutes of Medical Research, Ouagadougou, 176, Burkina Faso.
Isidore Juste OuindguetaDepartment, University of Joseph KI-ZERBO, Street, Ouagadouogou, Burkina Faso.
Zenat Zebin HossainDepartment of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.
Anowara BegumDepartment of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.
Deyan DonchevClinical Laboratory of Microbiology and Virology, University Hospital "Lozenetz", Str. Kozyak 1, Sofia, 1407, Sofia, Bulgaria.ORCID http://orcid.org/0000-0001-7447-7627
Mathew DiggleAlberta Precision Laboratories, Alberta, Canada.
LeeAnn TurnbullAlberta Precision Laboratories, Alberta, Canada.
Simon LévesqueService de microbiologie, Centre Integré Universitaire de Santé et de services sociaux de l'Estrie - Centre Hospitalier Universitaire de Sherbrooke, 3001 12è avenue Nord, Sherbrooke, J1H 5N4, Québec, Canada.ORCID http://orcid.org/0000-0002-4356-9702
Livia BerlingerDepartment, Bioanalytica AG, Luzern, 6006, Switzerland.
Kirstine Kobberoe SogaardDivision of Clinical Bacteriology and Mycology, University Hospital Basel, Petersgraben 4, Basel, 4031, Switzerland.
Paula Diaz GuevaraMicrobiology Group, Instituto Nacional de Salud, Avenida Calle 26·51-20 CAN, Bogotá, 111321, Colombia.
Carolina Duarte ValderramaMicrobiology Group, Instituto Nacional de Salud, Avenida Calle 26·51-20 CAN, Bogotá, 111321, Colombia.
Panagiota MaikantiCharalampous, Microbiology Department, National Reference Laboratory for Antimicrobial Resistance Surveillance, Nicosia General Hospital, 215, Paleos Dromos Lefkosia-Lemesos str., Strovolos, 2029, Nicosia, Cyprus.
Jana AmlerovaDepartment of Microbiology, University Hospital in Plzen, Edvarda Benese 1128/13, Plzen, 305 99, Czech Republic.
Pavel DrevinekDepartment of Medical Microbiology, Motol University Hospital, V Uvalu 84, Prague, 15006, Czech Republic.
Jan TkadlecDepartment of Medical Microbiology, Motol University Hospital, V Uvalu 84, Prague, 15006, Czech Republic.
Milica DilasOtto-von-Guericke University, Magdebourg, Germany.
Achim KaaschOtto-von-Guericke University, Magdebourg, Germany.
Henrik Torkil WesthKlinisk Mikrobiologisk Afdeling, Hvidovre Hospital, Kettegårds Allé, Hvidovre, 2650, Denmark.ORCID http://orcid.org/0000-0001-5681-647X
Mohamed Azzedine BachtarziLaboratoire de Microbiologie Clinique, Centre Hospitalo-universitaire, 1 place du 1er Mai 1945, Algiers, 16000, Algeria.
Wahiba AmhisLaboratoire de Microbiologie Clinique, Centre Hospitalo-universitaire, 1 place du 1er Mai 1945, Algiers, 16000, Algeria.
Carolina Elisabeth Satán SalazarNational Reference Center for Antimicrobial Resistance, National Institute of Public Health Research "Dr. Leopoldo Izquieta Pérez", Iquique N14-285, Quito, 170403, Pichicha, Ecuador.
JoséEduardo VillacisCentro de Investigación para la Salud en América Latina (CISeAL), Pontificia Universidad Católica del Ecuador, Quinto, 1701-2184, Pichincha, Ecuador.
Mária Angeles Dominguez LúzonDepartment of Pathology and Experimental Therapy, Universitat de Barcelona, Barcelona, Spain.
Dámaris Berbel PalauMicrobiology Department, Hospital de Bellvitge, Barcelona, 10587, Spain.
Claire DuployezInstitute of Microbiology, Centre Hospitalier Universitaire de Lille, Rue du Pr. Jules Leclercq, Lille, 59037, France.
Maxime PalucheBacteriology laboratory, Centre hospitalier de Valenciennes, Avenue Désandrouin, Valenciennes, 59300, France.
Solomon Asante-SefaSekondi Public Health Laboratory, Ghana Health Service, Effia Nkwanta Regional Hospital, Effia Nkwanta Regional Hospital, Takoradi, Ghana.
Mie MollerDronning Ingrids Hospital, Nuuk, Greenland.
Margaret IpChinese University of Hong Kong, Shatin, Hong Kong.ORCID http://orcid.org/0000-0003-1291-6537
Ivana MarekovićDepartment of Clinical and Molecular Microbiology, University Hospital Centre Zagreb, Kišpatićeva 12, Zagreb, 10000, Croatia.
Agnes Pál-SonnevendMedical Microbiology and Immunology, University of Pecs Medical School, Szigeti ut 12, Pecs, 7631, Hungary.
Clementiza Elvezia CocuzzaDepartment of Medicine and Surgery, University of Milano-Bicocca, Milan, Italy.
Asta DambrauskieneLaboratory Medicine Department, Hospital of Lithuanian University of Health Sciences Kauno klinikos, Eiveniu Str. 2, Kaunas, 50161, Lithuania.
Alexandre MacanzeCentro de Investigação em Saúde de Manhiça, Manhiça, Mozambique.
Anelsio CossaCentro de Investigação em Saúde de Manhiça, Manhiça, Mozambique.
Inácio MandomandoCentro de Investigação em Saúde de Manhiça, Manhiça, Mozambique.
Philip Nwajiobi-PrincewillNational Hospital Abuja, Abuja, Nigeria.
Iruka N OkekeFaculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria.ORCID http://orcid.org/0000-0002-1694-7587
Aderemi O KehindeCollege of Medicine, University of Ibadan, Ibadan, Oyo State, Nigeria.
Ini AdebiyiFaculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria.ORCID http://orcid.org/0000-0002-6181-0918
Ifeoluwa AkintayoCollege of Medicine, University of Ibadan, Ibadan, Oyo State, Nigeria.
Oluwafemi PopoolaCollege of Medicine, University of Ibadan, Ibadan, Oyo State, Nigeria.
Anthony OnipedeObafemi Awolowo University, Ile-Ife, Nigeria.
Anita BlomfeldtDepartment of Microbiology and Infection Control, Akershus University Hospital, Sykehusveien 25, Lørenskog, 1478, Norway.
Nora Elisabeth NyquistDepartment of Microbiology and Infection Control, Akershus University Hospital, Sykehusveien 25, Lørenskog, 1478, Norway.ORCID http://orcid.org/0000-0002-5332-5496
Kiri BockerSouthern Community Laboratories, University of Otago, 472 George Street, Otago, 9016, Dunedin, New Zealand.
James UssherSouthern Community Laboratories, University of Otago, 472 George Street, Otago, 9016, Dunedin, New Zealand.ORCID http://orcid.org/0000-0001-9222-7680
Amjad AliDepartment of Industrial Biotechnology, Atta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology (NUST), H-12, Islamabad, 44000, Pakistan.
Nimat UllahDepartment of Industrial Biotechnology, Atta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology (NUST), H-12, Islamabad, 44000, Pakistan.ORCID http://orcid.org/0000-0002-7138-1272
Habibullah KhanMolecular Diagnostic Section, Khyber Teaching Hospital (KTH), University Road, Peshawar, 25120, Pakistan.
Natalie Weiler GustafsonDepartamento de Bacteriologia, Laboratorio Central de Salud Publico, Avenida Venezuela y Tte Escurra, Asunción, CP, 1429, Paraguay.
Ikhlas JarrarBasic Medical Sciences Department, Arab American University, AAUP st., Zababdeh, P240, Jenin, Palestine.
Arif Al-HamadDivision of Clinical Microbiology, Qatif Central Hospital, 3213 Dharan-Jubail Expressway, Al-Qatif, 32654-7376, Eastern Province, Saudi Arabia.
Viravarn LuviraDepartment of Clinical Tropical Medicine, Faculty of Tropical Medicine, Mahidol University, Ratchawithi Road, Bangkok, 10400, Thailand.
Wantana PaveenkittipornDepartment of Medical Sciences, National Institute of Health, Sariburi, Thailand.
Irmak BaranMedical Microbiology Department, Karadeniz Technical University Farabi Hospital, Farabi Hastanesi, Trabzon, 61080, Ortahisar, Turkey.
James C L MwansaLusaka Apex Medical School, Lusaka, Zambia.
Linda SikakwaLevy Mwanawasa Teaching Hospital, Lusaka, Zambia.
Kaunda YambaUniversity Teaching Hospital, Lusaka, Zambia.
Rene Sjogren HendriksenNational Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
Frank Moller AarestrupNational Food Institute, Technical University of Denmark, Kemitorvet, Kgs, Lyngby, 2800, Denmark.
Funding
EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 87473EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 874735Novo Nordisk Fonden (Novo Nordisk Foundation) NNF16OC0021856
Abstract
The Two Weeks in the World research project has resulted in a dataset of 3087 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units in 35 countries around the world during 2020. A relational database is available with metadata and summary data from selected bioinformatic analysis, such as species prediction and identification of acquired resistance genes.
Indexed as
BacteriaGenome, BacterialComputational BiologyDatabases, FactualMetadata
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.