Evidence map›Paper›PMID 37713620›Full record

ArticleNucleic acids research2023

OTUD5 limits replication fork instability by organizing chromatin remodelers.

Angelo de Vivo, Hongseon Song, Yujin Lee, Neysha Tirado-Class, Anthony Sanchez, Sandy Westerheide, Huzefa Dungrawala, Younghoon Kee

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Nucleoporins cooperate with Polycomb silencers to promote transcriptional repression and repair at DNA double-strand breaks.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Angelo de VivoDepartment of Molecular Biosciences, College of Arts and Sciences, University of South Florida, Tampa, FL 33647, USA.
Hongseon SongDepartment of New Biology, Daegu Gyeongbuk Institute of Science and Technology (DGIST), 333 Techno-Joongang-daero, Dalseong-gun, Daegu 42988, Republic of Korea.
Yujin LeeDepartment of New Biology, Daegu Gyeongbuk Institute of Science and Technology (DGIST), 333 Techno-Joongang-daero, Dalseong-gun, Daegu 42988, Republic of Korea.
Neysha Tirado-ClassDepartment of Molecular Biosciences, College of Arts and Sciences, University of South Florida, Tampa, FL 33647, USA.
Anthony SanchezDepartment of Molecular Biosciences, College of Arts and Sciences, University of South Florida, Tampa, FL 33647, USA.
Sandy WesterheideDepartment of Molecular Biosciences, College of Arts and Sciences, University of South Florida, Tampa, FL 33647, USA.
Huzefa DungrawalaDepartment of Molecular Biosciences, College of Arts and Sciences, University of South Florida, Tampa, FL 33647, USA.
Younghoon KeeDepartment of Molecular Biosciences, College of Arts and Sciences, University of South Florida, Tampa, FL 33647, USA.ORCID 0000-0001-9995-8339
University of South Florida · USDaegu Gyeongbuk Institute of Science and Technology · KR

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI John L. Cleveland · 1998 to 2026
$93.5M
Molecular Mechanisms of Replication Stress ResponseR35GM137800 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI Huzefa Mannan Dungrawala · 2020 to 2026
$2.3M
The role of UBR5 in the PRC1-mediated transcriptional repression at damaged chromatinR01GM117062 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI WESTERHEIDE, SANDRA D. · 2017 to 2021
$1.5M
NCI NIH HHS P30 CA076292NIGMS NIH HHS R01 GM117062NIGMS NIH HHS R35 GM137800
6 · The paper itself

Abstract

Proper regulation of replication fork progression is important for genomic maintenance. Subverting the transcription-induced conflicts is crucial in preserving the integrity of replication forks. Various chromatin remodelers, such as histone chaperone and histone deacetylases are known to modulate replication stress, but how these factors are organized or collaborate are not well understood. Here we found a new role of the OTUD5 deubiquitinase in limiting replication stress. We found that OTUD5 is recruited to replication forks, and its depletion causes replication fork stress. Through its C-terminal disordered tail, OTUD5 assembles a complex containing FACT, HDAC1 and HDAC2 at replication forks. A cell line engineered to specifically uncouple FACT interaction with OTUD5 exhibits increases in FACT loading onto chromatin, R-loop formation, and replication fork stress. OTUD5 mediates these processes by recruiting and stabilizing HDAC1 and HDAC2, which decreases H4K16 acetylation and FACT recruitment. Finally, proteomic analysis revealed that the cells with deficient OTUD5-FACT interaction activates the Fanconi Anemia pathway for survival. Altogether, this study identified a new interaction network among OTUD5-FACT-HDAC1/2 that limits transcription-induced replication stress.

Indexed as

ChromatinDNA ReplicationCell LineEndopeptidasesGenomic InstabilityHumansProteomicsChromatinEndopeptidasesOTUD5 protein, human

Identifiers

PMID37713620
PMCPMC10602872
OpenAlexW4386758595

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.