Evidence map›Paper›PMID 37712349›Full record

ArticleThe Journal of heredity2024

A genome assembly of the Yuma myotis bat, Myotis yumanensis.

Joseph N Curti, Devaughn Fraser, Merly Escalona, Colin W Fairbairn, Samuel Sacco, Ruta Sahasrabudhe, Oanh Nguyen, William Seligmann, Peter H Sudmant, Erin Toffelmier and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of heredity, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. The genome sequence of the Lesser noctule,Wellcome open research · 2026
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Joseph N CurtiDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles (UCLA), Los Angeles, CA, United States.ORCID 0000-0003-4630-9073
Devaughn FraserConnecticut Department of Energy and Environmental Protection, Hartford, CT, United States.ORCID 0000-0002-4838-7107
Merly EscalonaDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, United States.ORCID 0000-0003-0213-4777
Colin W FairbairnDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA, United States.
Samuel SaccoDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA, United States.ORCID 0000-0003-1227-8934
Ruta SahasrabudheDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, Davis, CA, United States.ORCID 0000-0002-3285-6845
Oanh NguyenDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, Davis, CA, United States.ORCID 0000-0003-1492-2084
William SeligmannDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA, United States.ORCID 0000-0002-5762-3095
Peter H SudmantDepartment of Integrative Biology, University of California, Berkeley, Berkeley, CA, United States.ORCID 0000-0002-9573-8248
Erin ToffelmierDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles (UCLA), Los Angeles, CA, United States.ORCID 0000-0001-6028-8497
Juan Manuel VazquezDepartment of Integrative Biology, University of California, Berkeley, Berkeley, CA, United States.ORCID 0000-0001-8341-2390
Robert WayneDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles (UCLA), Los Angeles, CA, United States.ORCID 0000-0003-3537-2245
H Bradley ShafferDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles (UCLA), Los Angeles, CA, United States.ORCID 0000-0002-5795-9242
Michael R BuchalskiWildlife Genetics Research Unit, Wildlife Health Laboratory, California Department of Fish and Wildlife, Sacramento, CA, United States.ORCID 0000-0002-5917-3577
University of California, Los Angeles · USUniversity of California, Santa Cruz · USUniversity of California, Berkeley · USUniversity of California, Davis · USCalifornia Department of Fish and Wildlife · USConnecticut Department of Energy and Environmental Protection · US

Funding

The evolution and diversity of mutation, molecular fidelity, and genome structureR35GM142916 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Peter Heshedahl Sudmant · 2021 to 2026
$2.5M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NIGMS NIH HHS R35 GM142916NIH HHS S10 OD010786NIH HHS S10 OD018174
6 · The paper itself

Abstract

The Yuma myotis bat (Myotis yumanensis) is a small vespertilionid bat and one of 52 species of new world Myotis bats in the subgenus Pizonyx. While M. yumanensis populations currently appear relatively stable, it is one of 12 bat species known or suspected to be susceptible to white-nose syndrome, the fungal disease causing declines in bat populations across North America. Only two of these 12 species have genome resources available, which limits the ability of resource managers to use genomic techniques to track the responses of bat populations to white-nose syndrome generally. Here we present the first de novo genome assembly for Yuma myotis, generated as a part of the California Conservation Genomics Project. The M. yumanensis genome was generated using a combination of PacBio HiFi long reads and Omni-C chromatin-proximity sequencing technology. This high-quality genome is one of the most complete bat assemblies available, with a contig N50 of 28.03 Mb, scaffold N50 of 99.14 Mb, and BUSCO completeness score of 93.7%. The Yuma myotis genome provides a high-quality resource that will aid in comparative genomic and evolutionary studies, as well as inform conservation management related to white-nose syndrome.

Indexed as

ChiropteraAnimalsBiological EvolutionGenomeGenomicsNorth AmericaCalifornia Conservation Genomics ProjectCCGPchiropteralong-read assemblyMyotis yumanensisreference genome

Identifiers

PMID37712349
PMCPMC10838121
OpenAlexW4386757424

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.