Evidence map›Paper›PMID 37710017›Full record

ArticleNature methods2023

Crystal ribcage: a platform for probing real-time lung function at cellular resolution.

Rohin Banerji, Gabrielle N Grifno, Linzheng Shi, Dylan Smolen, Rob LeBourdais, Johnathan Muhvich, Cate Eberman, Bradley E Hiller, Jisu Lee, Kathryn Regan and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Nature methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Engineering function in lung biology: integrating imaging, regenerative constructs, and functional biodesign.American journal of physiology. Lung cellular and molecular physiology · 2026
    Review
  5. Article
  6. The importance of mechanical forces in chronic respiratory diseases.European respiratory review : an official journal of the European Respiratory Society · 2026
    Review
  7. Review
  8. Article
  9. Article
  10. Lung Lymphatics in Edema, Inflammation, and Thrombosis.Arteriosclerosis, thrombosis, and vascular biology · 2025
    Review
  11. Review
  12. Bioenergetics and metabolism of the pulmonary endothelium. Scientific session I: ReSPIRE 2025.American journal of physiology. Lung cellular and molecular physiology · 2025
    Review
  13. Solid Stress Estimations via Intraoperative 3D Navigation in Patients with Brain Tumors.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 1 institution in 2 countries.

Rohin Banerji *Department of Biomedical Engineering, Boston University, Boston, MA, USA.ORCID 0009-0009-5885-9719
Gabrielle N Grifno *Department of Biomedical Engineering, Boston University, Boston, MA, USA.
Linzheng ShiDepartment of Biomedical Engineering, Boston University, Boston, MA, USA.
Dylan SmolenDepartment of Biomedical Engineering, Boston University, Boston, MA, USA.
Rob LeBourdaisDepartment of Biomedical Engineering, Boston University, Boston, MA, USA.ORCID 0009-0000-9605-8845
Johnathan MuhvichDepartment of Biomedical Engineering, Boston University, Boston, MA, USA.
Cate EbermanDepartment of Biomedical Engineering, Boston University, Boston, MA, USA.
Bradley E HillerPulmonary Center, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.
Jisu LeePulmonary Center, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.
Kathryn ReganDepartment of Biomedical Engineering, Boston University, Boston, MA, USA.
Siyi ZhengDepartment of Biomedical Engineering, Boston University, Boston, MA, USA.
Sue ZhangDepartment of Biomedical Engineering, Boston University, Boston, MA, USA.ORCID 0000-0003-4248-9337
John JiangDepartment of Biomedical Engineering, Boston University, Boston, MA, USA.
Ahmed A RaslanPulmonary Center, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.ORCID 0000-0003-4936-1459
Julia C BredaSection of Computational Biomedicine, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.
Riley PihlPulmonary Center, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.
Katrina TraberPulmonary Center, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.ORCID 0000-0002-8534-4480
Sarah MazzilliSection of Computational Biomedicine, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.
Giovanni LigrestiPulmonary Center, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.
Joseph P MizgerdPulmonary Center, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.ORCID 0000-0002-4042-3169
Béla SukiDepartment of Biomedical Engineering, Boston University, Boston, MA, USA.ORCID 0000-0002-9720-1006
Hadi T NiaDepartment of Biomedical Engineering, Boston University, Boston, MA, USA. htnia@bu.edu.ORCID 0000-0003-1970-9901
Boston University · US

Funding

BIOLOGY OF THE LUNG--MULTIDISCIPLINARY PROGRAMT32HL007035 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI Darrell N. Kotton, JOSEPH P MIZGERD · 1985 to 2026
$24.3M
Pneumonia BiologyR35HL135756 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MIZGERD, JOSEPH P · 2017 to 2023
$6.6M
Translational Research in BiomaterialsT32EB006359 · NIBIB · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI MARK W. GRINSTAFF, Michelle H Teplensky · 2009 to 2026
$4.2M
Lung-resident antibacterial heterotypic immunityR01AI115053 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MIZGERD, JOSEPH P · 2015 to 2023
$4.0M
Pulmonary pathophysiology sub-phenotypes of pneumoniaR01AI162850 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI JOSEPH P MIZGERD · 2022 to 2026
$4.0M
Targeting vascular dysfunction to promote lung repair and fibrosis resolutionR01HL158733 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI LIGRESTI, GIOVANNI · 2022 to 2025
$2.8M
Probing functioning lung at the cellular resolution in health and diseaseDP2HL168562 · NHLBI · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI NIA, HADI TAVAKOLI · 2022 to 2025
$2.5M
Fibrin in the Infected LungR01HL171499 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI JOSEPH P MIZGERD · 2024 to 2026
$2.3M
Transcriptional Regulation of Migrating Neutrophils during PneumoniaR01HL158732 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI TRABER, KATRINA · 2021 to 2025
$2.1M
Classifying malignant pulmonary nodules using biophysics-enhanced artificial intelligenceR21EB031332 · NIBIB · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI NIA, HADI TAVAKOLI · 2021 to 2021
$660k
Advanced laser scanning confocal microscope for multiple usersS10OD024993 · OD · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI MERTZ, JEROME · 2018 to 2018
$448k
Probing immunovascular mechanobiology in pneumonia-associated acute lung injury at the single capillary levelF30HL168952 · NHLBI · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI Linzheng Shi · 2023 to 2026
$216k
NHLBI NIH HHS DP2 HL168562NHLBI NIH HHS F30 HL168952NHLBI NIH HHS R01 HL158732NHLBI NIH HHS R01 HL158733NHLBI NIH HHS R01 HL171499NHLBI NIH HHS R35 HL135756NHLBI NIH HHS T32 HL007035NIAID NIH HHS R01 AI115053NIAID NIH HHS R01 AI162850NIBIB NIH HHS R21 EB031332NIBIB NIH HHS T32 EB006359NIH HHS S10 OD024993
6 · The paper itself

Abstract

Understanding the dynamic pathogenesis and treatment response in pulmonary diseases requires probing the lung at cellular resolution in real time. Despite advances in intravital imaging, optical imaging of the lung during active respiration and circulation has remained challenging. Here, we introduce the crystal ribcage: a transparent ribcage that allows multiscale optical imaging of the functioning lung from whole-organ to single-cell level. It enables the modulation of lung biophysics and immunity through intravascular, intrapulmonary, intraparenchymal and optogenetic interventions, and it preserves the three-dimensional architecture, air-liquid interface, cellular diversity and respiratory-circulatory functions of the lung. Utilizing these capabilities on murine models of pulmonary pathologies we probed remodeling of respiratory-circulatory functions at the single-alveolus and capillary levels during disease progression. The crystal ribcage and its broad applications presented here will facilitate further studies of nearly any pulmonary disease as well as lead to the identification of new targets for treatment strategies.

Indexed as

LungRib CageAnimalsIntravital MicroscopyMice

Identifiers

PMID37710017
PMCPMC10860663
OpenAlexW4386743657

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.