Evidence map›Paper›PMID 37709842›Full record

ArticleScientific reports2023

Allele mining of eukaryotic translation initiation factor genes in Prunus for the identification of new sources of resistance to sharka.

David Tricon, Julie Faivre d'Arcier, Jean-Philippe Eyquard, Shuo Liu, Stéphane Decroocq, Aurélie Chague, Weisheng Liu, Gulnara Balakishiyeva, Alamdar Mammadov, Timur Turdiev and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Insights Into the Almond Domestication History.Evolutionary applications · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 6 countries.

David TriconINRAE, UMR 1332 BFP, Virologie, 71 Avenue Edouard Bourlaux, 33882, Villenave d'Ornon, France.
Julie Faivre d'ArcierINRAE, UMR 1332 BFP, Virologie, 71 Avenue Edouard Bourlaux, 33882, Villenave d'Ornon, France.
Jean-Philippe EyquardINRAE, UMR 1332 BFP, Virologie, 71 Avenue Edouard Bourlaux, 33882, Villenave d'Ornon, France.
Shuo LiuINRAE, UMR 1332 BFP, Virologie, 71 Avenue Edouard Bourlaux, 33882, Villenave d'Ornon, France.
Stéphane DecroocqINRAE, UMR 1332 BFP, Virologie, 71 Avenue Edouard Bourlaux, 33882, Villenave d'Ornon, France.
Aurélie ChagueINRAE, UMR 1332 BFP, Virologie, 71 Avenue Edouard Bourlaux, 33882, Villenave d'Ornon, France.
Weisheng LiuLiaoning Institute of Pomology, Tiedong Street, Xiongyue Town, Bayuquan District, Yingkou, 115009, Liaoning, China.
Gulnara BalakishiyevaInstitute of Molecular Biology and Biotechnologies, Ministry of Science and Education, 11 Izzat Nabiev Str., 1073, Baku, Azerbaijan.
Alamdar MammadovInstitute of Molecular Biology and Biotechnologies, Ministry of Science and Education, 11 Izzat Nabiev Str., 1073, Baku, Azerbaijan.
Timur TurdievInstitute of Plant Biology and Biotechnology, Timiryazev Str. 45, 050040, Almaty, Kazakhstan.
Tatiana KostritsynaInternational Higher School of Medicine, 1F Intergelpo Street, 720054, Bishkek, Kyrgyzstan.
Bayram M AsmaDepartment of Horticulture, Malatya Turgut Ozal University, Malatya, 44210, Turkey.
Zeynal AkparovGenetic Resources Institute of ANAS, Azadlig Ave. 155, 1106, Baku, Azerbaijan.
Véronique DecroocqINRAE, UMR 1332 BFP, Virologie, 71 Avenue Edouard Bourlaux, 33882, Villenave d'Ornon, France. veronique.decroocq@inrae.fr.ORCID http://orcid.org/0000-0001-6745-6350
Université de Bordeaux · FRAzerbaijan Genetic Resources Institute · AZInstitute of Plant Biology and Biotechnology · KZInstitute of Pomology · CNInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRInternational University of Kyrgyzstan · KGTurgut Özal University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the eukaryotic translation initiation complex are co-opted in viral infection, leading to susceptibility in many crop species, including stone fruit trees (Prunus spp.). Therefore, modification of one of those eukaryotic translation initiation factors or changes in their gene expression may result in resistance. We searched the crop and wild Prunus germplasm from the Armeniaca and Amygdalus taxonomic sections for allelic variants in the eIF4E and eIFiso4E genes, to identify alleles potentially linked to resistance to Plum pox virus (PPV). Over one thousand stone fruit accessions (1397) were screened for variation in eIF4E and eIFiso4E transcript sequences which are in single copy within the diploid Prunus genome. We identified new alleles for both genes differing from haplotypes associated with PPV susceptible accessions. Overall, analyses showed that eIFiso4E is genetically more constrained since it displayed less polymorphism than eIF4E. We also demonstrated more variations at both loci in the related wild species than in crop species. As the eIFiso4E translation initiation factor was identified as indispensable for PPV infection, a selection of ten different eIFiso4E haplotypes along 13 accessions were tested by infection with PPV and eight of them displayed a range of reduced susceptibility to resistance, indicating new potential sources of resistance to sharka.

Indexed as

Eukaryotic Initiation Factor-4EPrunusAllelesCytoplasmEukaryotic Initiation FactorsEukaryotic Initiation Factor-4EEukaryotic Initiation Factors

Identifiers

PMID37709842
PMCPMC10502034
OpenAlexW4386742962

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.