Evidence map›Paper›PMID 37709802›Full record

ArticleNPJ genomic medicine2023

A pan-sarcoma landscape of telomeric content shows that alterations in RAD51B and GID4 are associated with higher telomeric content.

Radwa Sharaf, Dexter X Jin, John Grady, Christine Napier, Ericka Ebot, Garrett M Frampton, Lee A Albacker, David M Thomas, Meagan Montesion

Open access · goldAbstract read
In one paragraph

Article in NPJ genomic medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Telomeres and telomerase in Sarcoma disease and therapy.International journal of medical sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Radwa SharafFoundation Medicine Inc., Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-5214-380X
Dexter X JinFoundation Medicine Inc., Cambridge, MA, USA.
John GradyOmico Australian Genomic Cancer Medicine, Sydney, Australia.
Christine NapierOmico Australian Genomic Cancer Medicine, Sydney, Australia.
Ericka EbotFoundation Medicine Inc., Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-7144-693X
Garrett M FramptonFoundation Medicine Inc., Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-2361-2750
Lee A AlbackerFoundation Medicine Inc., Cambridge, MA, USA.
David M ThomasOmico Australian Genomic Cancer Medicine, Sydney, Australia.
Meagan MontesionFoundation Medicine Inc., Cambridge, MA, USA. mmontesion@foundationmedicine.com.ORCID http://orcid.org/0000-0001-9155-556X
Foundation Medicine (United States)Garvan Institute of Medical Research · AUDermatology Foundation · US

Funding

Department of Health | National Health and Medical Research Council (NHMRC) GNT1195742
6 · The paper itself

Abstract

Tumor cells need to activate a telomere maintenance mechanism, enabling limitless replication. The bulk of evidence supports that sarcomas predominantly use alternative lengthening of telomeres (ALT) mechanism, commonly associated with alterations in ATRX and DAXX. In our dataset, only 12.3% of sarcomas harbored alterations in these genes. Thus, we checked for the presence of other genomic determinants of high telomeric content in sarcomas. Our dataset consisted of 13555 sarcoma samples, sequenced as a part of routine clinical care on the FoundationOne®Heme platform. We observed a median telomeric content of 622.3 telomeric reads per GC-matched million reads (TRPM) across all samples. In agreement with previous studies, telomeric content was significantly higher in ATRX altered and POT1 altered sarcomas. We further observed that sarcomas with alterations in RAD51B or GID4 were enriched in samples with high telomeric content, specifically within uterus leiomyosarcoma for RAD51B and soft tissue sarcoma (not otherwise specified, nos) for GID4, Furthermore, RAD51B and POT1 alterations were mutually exclusive with ATRX and DAXX alterations, suggestive of functional redundancy. Our results propose a role played by RAD51B and GID4 in telomere elongation in sarcomas and open research opportunities for agents aimed at targeting this critical pathway in tumorigenesis.

Identifiers

PMID37709802
PMCPMC10502097
OpenAlexW4386727564

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.