Evidence map›Paper›PMID 37705059›Full record

ArticleBiology direct2023

Preliminary insights into RNA in CSF of pediatric SMA patients after 6 months of nusinersen.

M Garofalo, S Bonanno, S Marcuzzo, C Pandini, E Scarian, F Dragoni, R Di Gerlando, M Bordoni, S Parravicini, C Gellera and 7 more

Open access · goldAbstract read
In one paragraph

Article in Biology direct, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 3 countries.

M Garofalo *IRCCS Mondino Foundation, Pavia, Italy.
S Bonanno *Neurology IV-Neuroimmunology and Neuromuscular Diseases Unit, Fondazione IRCCS Istituto Neurologico Carlo Besta, Milan, Italy.
S MarcuzzoNeurology IV-Neuroimmunology and Neuromuscular Diseases Unit, Fondazione IRCCS Istituto Neurologico Carlo Besta, Milan, Italy.
C PandiniDepartment of Biosciences, University of Milan, Milan, Italy.
E ScarianIRCCS Mondino Foundation, Pavia, Italy.
F DragoniIRCCS Mondino Foundation, Pavia, Italy.
R Di GerlandoIRCCS Mondino Foundation, Pavia, Italy.
M BordoniIRCCS Mondino Foundation, Pavia, Italy.
S ParraviciniIRCCS Mondino Foundation, Pavia, Italy.
C GelleraUnit of Medical Genetics and Neurogenetics, Fondazione IRCCS Istituto Neurologico Carlo Besta, Milan, Italy.
R MassonNeurology IV-Neuroimmunology and Neuromuscular Diseases Unit, Fondazione IRCCS Istituto Neurologico Carlo Besta, Milan, Italy.
C DosiNeurology IV-Neuroimmunology and Neuromuscular Diseases Unit, Fondazione IRCCS Istituto Neurologico Carlo Besta, Milan, Italy.
R ZaninNeurology IV-Neuroimmunology and Neuromuscular Diseases Unit, Fondazione IRCCS Istituto Neurologico Carlo Besta, Milan, Italy.
O PansarasaIRCCS Mondino Foundation, Pavia, Italy. orietta.pansarasa@mondino.it.
C CeredaCenter of Functional Genomics and Rare Diseases, V. Buzzi Children's Hospital, 20154, Milan, Italy.
A BerardinelliIRCCS Mondino Foundation, Pavia, Italy.
S GagliardiIRCCS Mondino Foundation, Pavia, Italy.
Fondazione IRCCS Istituto Neurologico Carlo Besta · ITUniversity of Pavia · ITOspedale dei Bambini Vittore Buzzi · ITUniversity of Milan · ITUrology Foundation · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSpinal muscular atrophy (SMA) is a rare autosomal-recessive neurodegenerative disorder caused by mutations in survival motor neuron 1 (SMN1) gene, and consequent loss of function of SMN protein, which results in progressive loss of lower motor neurons, and muscular wasting. Antisense oligonucleotide (ASO) nusinersen (Spinraza®) modulates the pre-mRNA splicing of the SMN2 gene, allowing rebalance of biologically active SMN. It is administered intrathecally via lumbar puncture after removing an equal amount of cerebrospinal fluid (CSF). Its effect was proven beneficial and approved since 2017 for SMA treatment. Given the direct effect of nusinersen on RNA metabolism, the aim of this project was to evaluate cell-free RNA (cfRNA) in CSF of SMA patients under ASOs treatment for biomarker discovery.

methodsBy RNA-sequencing approach, RNA obtained from CSF of pediatric SMA type 2 and 3 patients was processed after 6 months of nusinersen treatment, at fifth intrathecal injection (T6), and compared to baseline (T0).

resultsWe observed the deregulation of cfRNAs in patients at T6 and we were able to classify these RNAs into disease specific, treatment specific and treatment dependent. Moreover, we subdivided patients into "homogeneous" and "heterogeneous" according to their gene expression pattern. The "heterogeneous" group showed peculiar activation of genes coding for ribosomal components, meaning that in these patients a different molecular effect of nusinersen is observable, even if this specific molecular response was not referable to a clinical pattern.

conclusionsThis study provides preliminary insights into modulation of gene expression dependent on nusinersen treatment and lays the foundation for biomarkers discovery.

Indexed as

Muscular Atrophy, SpinalRNAChildHumansMutationOligonucleotidesnusinersenOligonucleotidesRNACell-free RNANusinersenSpinal muscular atrophyTranscriptomics

Identifiers

PMID37705059
PMCPMC10498611
OpenAlexW4386715419

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.