Evidence map›Paper›PMID 37704619›Full record

ArticleLight, science & applications2023

DEEP-squared: deep learning powered De-scattering with Excitation Patterning.

Navodini Wijethilake, Mithunjha Anandakumar, Cheng Zheng, Peter T C So, Murat Yildirim, Dushan N Wadduwage

Abstract read
In one paragraph

Article in Light, science & applications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Descattering and image restoration with a transformer-based neural network in deep tissue imaging.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Navodini Wijethilake *Center for Advanced Imaging, Faculty of Arts and Sciences, Harvard University, Cambridge, MA, USA.
Mithunjha Anandakumar *Center for Advanced Imaging, Faculty of Arts and Sciences, Harvard University, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-6392-6044
Cheng ZhengDepartment of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, MA, 02139, USA.
Peter T C SoDepartment of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, MA, 02139, USA.ORCID http://orcid.org/0000-0003-4698-6488
Murat YildirimLaser Biomedical Research Center, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, MA, 02139, USA.ORCID http://orcid.org/0000-0003-0853-2557
Dushan N WadduwageCenter for Advanced Imaging, Faculty of Arts and Sciences, Harvard University, Cambridge, MA, USA. wadduwage@fas.harvard.edu.ORCID http://orcid.org/0000-0002-0689-9454

Funding

Wide-Field Short-Wave Infrared (SWIR) multiphoton (MP) tissue imagingP41EB015871 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SO, PETER T. · 2012 to 2021
$11.3M
Developing next generation multiphoton systems to reveal cortico-thalamic interactions underlying short-term memory in behaving miceR00EB027706 · NIBIB · CLEVELAND CLINIC LERNER COM-CWRU · PI YILDIRIM, MURAT · 2022 to 2024
$747k
Structured light temporal focusing depth-resolved wide-field FLIM-FRET for in vivo synaptic imagingR21MH130067 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI NEDIVI, ELLY, SO, PETER T. · 2022 to 2023
$451k
Novel implementation of Temporal Focusing Line Scanning for Fast Imaging of Synaptic Structural Dynamics in vivoR21NS105070 · NINDS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI NEDIVI, ELLY, SO, PETER T. · 2017 to 2018
$437k
NIBIB NIH HHS P41 EB015871NIBIB NIH HHS R00 EB027706NIMH NIH HHS R21 MH130067NINDS NIH HHS R21 NS105070
6 · The paper itself

Abstract

Limited throughput is a key challenge in in vivo deep tissue imaging using nonlinear optical microscopy. Point scanning multiphoton microscopy, the current gold standard, is slow especially compared to the widefield imaging modalities used for optically cleared or thin specimens. We recently introduced "De-scattering with Excitation Patterning" or "DEEP" as a widefield alternative to point-scanning geometries. Using patterned multiphoton excitation, DEEP encodes spatial information inside tissue before scattering. However, to de-scatter at typical depths, hundreds of such patterned excitations were needed. In this work, we present DEEP

Identifiers

PMID37704619
PMCPMC10499829

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.