Evidence map›Paper›PMID 37701522›Full record

ArticleJournal of machine learning research : JMLR

Inference for a Large Directed Acyclic Graph with Unspecified Interventions.

Chunlin Li, Xiaotong Shen, Wei Pan

Abstract read
In one paragraph

Article in Journal of machine learning research : JMLR. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Causal Discovery with Generalized Linear Models through Peeling Algorithms.Journal of machine learning research : JMLR · 2024
    Article
  5. Discovery and inference of a causal network with hidden confounding.Journal of the American Statistical Association · 2024
    Article
  6. Nonlinear causal discovery with confounders.Journal of the American Statistical Association · 2024
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Chunlin LiSchool of Statistics, University of Minnesota, Minneapolis, MN 55455, USA.
Xiaotong ShenSchool of Statistics, University of Minnesota, Minneapolis, MN 55455, USA.
Wei PanDivision of Biostatistics, University of Minnesota, Minneapolis, MN 55455, USA.

Funding

Causal and integrative deep learning for Alzheimer's disease geneticsU01AG073079 · NIA · UNIVERSITY OF MINNESOTA · PI PAN, WEI · 2021 to 2025
$3.5M
Deep Learning with Neuroimaging Genetic Data for Alzheimer's DiseaseR01AG069895 · NIA · UNIVERSITY OF MINNESOTA · PI PAN, WEI, SHEN, XIAOTONG TOM · 2020 to 2024
$3.4M
Association analysis of rare variants with sequencing dataR01HL116720 · NHLBI · UNIVERSITY OF MINNESOTA · PI PAN, WEI, WEI, PENG · 2013 to 2020
$3.3M
Estimation and inference in directed acyclic graphical models for biological networksR01AG074858 · NIA · UNIVERSITY OF MINNESOTA · PI Wei Pan, XIAOTONG Tom SHEN · 2022 to 2026
$3.2M
Discovering causal genes, brain regions and other risk factors for Alzheimer's DiseaseR01AG065636 · NIA · UNIVERSITY OF MINNESOTA · PI PAN, WEI · 2020 to 2024
$3.1M
Powerful Inference and Prediction for Genetic AssociationR01HL105397 · NHLBI · UNIVERSITY OF MINNESOTA · PI PAN, WEI, SHEN, XIAOTONG TOM · 2011 to 2018
$2.9M
New Machine Learning Tools for Biomedical DataR01GM081535 · NIGMS · UNIVERSITY OF MINNESOTA · PI PAN, WEI, SHEN, XIAOTONG TOM · 2007 to 2014
$2.2M
Estimation and Inference of Gene Regulatory NetworksR01GM126002 · NIGMS · UNIVERSITY OF MINNESOTA · PI PAN, WEI, SHEN, XIAOTONG TOM · 2017 to 2020
$1.4M
NHLBI NIH HHS R01 HL105397NHLBI NIH HHS R01 HL116720NIA NIH HHS R01 AG065636NIA NIH HHS R01 AG069895NIA NIH HHS R01 AG074858NIA NIH HHS U01 AG073079NIGMS NIH HHS R01 GM081535NIGMS NIH HHS R01 GM126002
6 · The paper itself

Abstract

Statistical inference of directed relations given some unspecified interventions (i.e., the intervention targets are unknown) is challenging. In this article, we test hypothesized directed relations with unspecified interventions. First, we derive conditions to yield an identifiable model. Unlike classical inference, testing directed relations requires to identify the ancestors and relevant interventions of hypothesis-specific primary variables. To this end, we propose a peeling algorithm based on nodewise regressions to establish a topological order of primary variables. Moreover, we prove that the peeling algorithm yields a consistent estimator in low-order polynomial time. Second, we propose a likelihood ratio test integrated with a data perturbation scheme to account for the uncertainty of identifying ancestors and interventions. Also, we show that the distribution of a data perturbation test statistic converges to the target distribution. Numerical examples demonstrate the utility and effectiveness of the proposed methods, including an application to infer gene regulatory networks. The R implementation is available at https://github.com/chunlinli/intdag.

Indexed as

data perturbationhigh-dimensional inferenceidentifiabilitypeeling algorithmstructure learning

Identifiers

PMID37701522
PMCPMC10497226

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.