Evidence map›Paper›PMID 37700860›Full record

ArticleFrontiers in microbiology2023

Influence of sedimentary deposition on the microbial assembly process in Arctic Holocene marine sediments.

Dukki Han, Tim Richter-Heitmann, Ji-Hoon Kim, Michael W Friedrich, Xiuran Yin, Marcus Elvert, Jong-Sik Ryu, Kwangchul Jang, Seung-Il Nam

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Dukki HanDepartment of Marine Bioscience, Gangneung-Wonju National University, Gangneung-si, Gangwon-do, Republic of Korea.
Tim Richter-HeitmannMicrobial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Bremen, Germany.
Ji-Hoon KimMarine Geology & Energy Division, Korea Institute of Geoscience and Mineral Resources, Daejeon, Republic of Korea.
Michael W FriedrichMicrobial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Bremen, Germany.
Xiuran YinMicrobial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Bremen, Germany.
Marcus ElvertMARUM - Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.
Jong-Sik RyuDepartment of Earth and Environmental Sciences, Pukyong National University, Busan, Republic of Korea.
Kwangchul JangDivision of Glacial Environment Research, Korea Polar Research Institute, Incheon, Republic of Korea.
Seung-Il NamDivision of Glacial Environment Research, Korea Polar Research Institute, Incheon, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The sea-level rise during the Holocene (11-0 ky BP) and its resulting sedimentation and biogeochemical processes may control microbial life in Arctic sediments. To gain further insight into this interaction, we investigated a sediment core (up to 10.7 m below the seafloor) from the Chuckchi Shelf of the western Arctic Ocean using metabarcoding-based sequencing and qPCR to characterize archaeal and bacterial 16S rRNA gene composition and abundance, respectively. We found that Arctic Holocene sediments harbor local microbial communities, reflecting geochemical and paleoclimate separations. The composition of bacterial communities was more diverse than that of archaeal communities, and specifically distinct at the boundary layer of the sulfate-methane transition zone. Enriched cyanobacterial sequences in the Arctic middle Holocene (8-7 ky BP) methanogenic sediments remarkably suggest past cyanobacterial blooms. Bacterial communities were phylogenetically influenced by interactions between dispersal limitation and environmental selection governing community assembly under past oceanographic changes. The relative influence of stochastic and deterministic processes on the bacterial assemblage was primarily determined by dispersal limitation. We have summarized our findings in a conceptual model that revealed how changes in paleoclimate phases cause shifts in ecological succession and the assembly process. In this ecological model, dispersal limitation is an important driving force for progressive succession for bacterial community assembly processes on a geological timescale in the western Arctic Ocean. This enabled a better understanding of the ecological processes that drive the assembly of communities in Holocene sedimentary habitats affected by sea-level rise, such as in the shallow western Arctic shelves.

Indexed as

Arctic HoloceneeDNAmarine sedimentsmetabarcodingmicrobial assemblysedimentary deposition

Identifiers

PMID37700860
PMCPMC10493304

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.