Evidence map›Paper›PMID 37697621›Full record

ArticleJournal of medicinal chemistry2023

Inclusion of Control Data in Fits to Concentration-Response Curves Improves Estimates of Half-Maximal Concentrations.

Van Ngoc Thuy La, Stanley Nicholson, Amna Haneef, Lulu Kang, David D L Minh

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Van Ngoc Thuy LaDepartment of Biology, Illinois Institute of Technology, Chicago, Illinois 60616, United States.ORCID 0000-0001-5302-3271
Stanley NicholsonDepartment of Applied Mathematics, Illinois Institute of Technology, Chicago, Illinois 60616, United States.
Amna HaneefDepartment of Biology, Illinois Institute of Technology, Chicago, Illinois 60616, United States.
Lulu KangDepartment of Applied Mathematics, Illinois Institute of Technology, Chicago, Illinois 60616, United States.ORCID 0000-0002-6000-3436
David D L MinhDepartment of Chemistry, Illinois Institute of Technology, Chicago, Illinois 60616, United States.ORCID 0000-0002-4802-2618

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Concentration-response curves, in which the effect of varying the concentration on the response of an assay is measured, are widely used to evaluate biological effects of chemical compounds. While National Center for Advancing Translational Sciences guidelines specify that readouts should be normalized by the controls, recommended statistical analyses do not explicitly fit to the control data. Here, we introduce a nonlinear regression procedure based on maximum likelihood estimation that determines parameters for the classical Hill equation by fitting the model to both the curve and the control data. Simulations show that the proposed procedure provides more precise parameters compared with previously prescribed practices. Analysis of enzymatic inhibition data from the COVID Moonshot demonstrates that the proposed procedure yields a lower asymptotic standard error for estimated parameters. Benefits are most evident in the analysis of the incomplete curves. We also find that Lenth's outlier detection method appears to determine parameters more precisely.

Indexed as

COVID-19Humans

Identifiers

PMID37697621
PMCPMC10544339

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.