Evidence map›Paper›PMID 37697397›Full record

ArticleParasites & vectors2023

Chromosome-level Dinobdella ferox genome provided a molecular model for its specific parasitism.

Jiang-Wei Gao, Jian-Wei Sun, Xiang-Rong Tong, Hao Wang, Qing-Mei Hu, Yan-Ru Cao, Zhan-Han Zhou, Zi-Chao Liu

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Jiang-Wei Gao *Engineering Research Center for Exploitation and Utilization of Leech Resources in Universities of Yunnan Province, School of Agriculture & Life Sciences, Kunming University, Kunming, China.
Jian-Wei Sun *Department of Medical Ultrasonography, Fifth Affiliated Hospital, Kunming Medical University, Gejiu, China.
Xiang-Rong Tong *Engineering Research Center for Exploitation and Utilization of Leech Resources in Universities of Yunnan Province, School of Agriculture & Life Sciences, Kunming University, Kunming, China.
Hao WangEngineering Research Center for Exploitation and Utilization of Leech Resources in Universities of Yunnan Province, School of Agriculture & Life Sciences, Kunming University, Kunming, China.
Qing-Mei HuEngineering Research Center for Exploitation and Utilization of Leech Resources in Universities of Yunnan Province, School of Agriculture & Life Sciences, Kunming University, Kunming, China.
Yan-Ru CaoEngineering Research Center for Exploitation and Utilization of Leech Resources in Universities of Yunnan Province, School of Agriculture & Life Sciences, Kunming University, Kunming, China.
Zhan-Han ZhouSchool of XJTLU Wisdom Lake Academy of Pharmacy, Xi'an Jiaotong-Liverpool University, Suzhou, China.
Zi-Chao LiuEngineering Research Center for Exploitation and Utilization of Leech Resources in Universities of Yunnan Province, School of Agriculture & Life Sciences, Kunming University, Kunming, China. abclzc@aliyun.com.
Kunming University · CNKunming Medical University · CNXi’an Jiaotong-Liverpool University · CN

Funding

Major Science and Technique Programs in Yunnan Province 202102AA310055National Natural Science Foundation of China 32260132Yunnan Provincial Ten Thousand People Plan YNWR-QNBJ-2018-161Yunnan Provincial Training Programs of Youth Leader in Academic and Technical Reserve Talent 2018HB101
6 · The paper itself

Abstract

backgroundDinobdella ferox is the most frequently reported leech species parasitizing the mammalian nasal cavity. However, the molecular mechanism of this special parasitic behavior has remained largely unknown.

methodsPacBio long-read sequencing, next-generation sequencing (NGS), and Hi-C sequencing were employed in this study to generate a novel genome of D. ferox, which was annotated with strong certainty using bioinformatics methods. The phylogenetic and genomic alterations of D. ferox were then studied extensively alongside the genomes of other closely related species. The obligatory parasitism mechanism of D. ferox was investigated using RNA-seq and proteomics data.

resultsPacBio long-read sequencing and NGS yielded an assembly of 228 Mb and contig N50 of 2.16 Mb. Along Hi-C sequencing, 96% of the sequences were anchored to nine linkage groups and a high-quality chromosome-level genome was generated. The completed genome included 19,242 protein-coding genes. For elucidating the molecular mechanism of nasal parasitism, transcriptome data were acquired from the digestive tract and front/rear ends of D. ferox. Examining secretory proteins in D. ferox saliva helped to identify intimate connections between these proteins and membrane proteins in nasal epithelial cells. These interacting proteins played important roles in extracellular matrix (ECM)-receptor interaction, tight junction, focal adhesion, and adherens junction. The interaction between D. ferox and mammalian nasal epithelial cells included three major steps of pattern recognition, mucin connection and breakdown, and repair of ECM. The remodeling of ECM between epithelial cells of the nasal mucosa and epithelial cells of D. ferox may produce a stable adhesion environment for parasitism.

conclusionsOur study represents the first-ever attempt to propose a molecular model for specific parasitism. This molecular model may serve as a practical reference for parasitism models of other species and a theoretical foundation for a molecular process of parasitism.

Indexed as

GenomicsLeechesAnimalsHigh-Throughput Nucleotide SequencingMammalsModels, MolecularNosePhylogenyChromosome-level genomeDinobdella feroxInterspecific molecular interactionLeechParasitism modelingParasitology

Identifiers

PMID37697397
PMCPMC10494388
OpenAlexW4386604227

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.