Evidence map›Paper›PMID 37693566›Full record

ArticlebioRxiv : the preprint server for biology2023

Automatic Ploidy Prediction and Quality Assessment of Human Blastocyst Using Time-Lapse Imaging.

Suraj Rajendran, Matthew Brendel, Josue Barnes, Qiansheng Zhan, Jonas E Malmsten, Pantelis Zisimopoulos, Alexandros Sigaras, Kwabena Ofori-Atta, Marcos Meseguer, Kathleen A Miller and 5 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 5 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 1 institution in 2 countries.

Matthew Brendel
Josue Barnes
Qiansheng Zhan
Jonas E Malmsten
Pantelis Zisimopoulos
Alexandros SigarasORCID 0000-0002-7607-559X
Kwabena Ofori-Atta
Marcos Meseguer
Kathleen A Miller
David Hoffman
Zev Rosenwaks
Olivier Elemento
Nikica Zaninovic
Iman Hajirasouliha
Cornell University · US

Funding

Improving Metagenomic Analysis with Novel Algorithms and TechnologiesR35GM138152 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Iman Hajirasouliha · 2020 to 2026
$2.5M
NIGMS NIH HHS R35 GM138152
6 · The paper itself

Abstract

Assessing fertilized human embryos is crucial for in vitro-fertilization (IVF), a task being revolutionized by artificial intelligence and deep learning. Existing models used for embryo quality assessment and chromosomal abnormality (ploidy) detection could be significantly improved by effectively utilizing time-lapse imaging to identify critical developmental time points for maximizing prediction accuracy. Addressing this, we developed and compared various embryo ploidy status prediction models across distinct embryo development stages. We present BELA (Blastocyst Evaluation Learning Algorithm), a state-of-the-art ploidy prediction model surpassing previous image- and video-based models, without necessitating subjective input from embryologists. BELA uses multitask learning to predict quality scores that are used downstream to predict ploidy status. By achieving an AUC of 0.76 for discriminating between euploidy and aneuploidy embryos on the Weill Cornell dataset, BELA matches the performance of models trained on embryologists' manual scores. While not a replacement for preimplantation genetic testing for aneuploidy (PGT-A), BELA exemplifies how such models can streamline the embryo evaluation process, reducing time and effort required by embryologists.

Identifiers

PMID37693566
PMCPMC10491146
OpenAlexW4386388550

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.