Evidence map›Paper›PMID 37691489›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2023

Genome and transcriptome analyses reveal genes involved in the formation of fine ridges on petal epidermal cells in Hibiscus trionum.

Shizuka Koshimizu, Sachiko Masuda, Arisa Shibata, Takayoshi Ishii, Ken Shirasu, Atsushi Hoshino, Masanori Arita

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Shizuka KoshimizuBioinformation and DDBJ Center, National Institute of Genetics, Mishima 411-8540, Japan.ORCID 0000-0001-9469-3757
Sachiko MasudaCenter for Sustainable Resource Science, RIKEN, Yokohama 230-0045, Japan.
Arisa ShibataCenter for Sustainable Resource Science, RIKEN, Yokohama 230-0045, Japan.
Takayoshi IshiiArid Land Research Center, Tottori University, Tottori 680-001, Japan.ORCID 0000-0001-6370-3289
Ken ShirasuCenter for Sustainable Resource Science, RIKEN, Yokohama 230-0045, Japan.ORCID 0000-0002-0349-3870
Atsushi HoshinoNational Institute for Basic Biology, Okazaki 444-8585, Japan.ORCID 0000-0003-1926-5028
Masanori AritaBioinformation and DDBJ Center, National Institute of Genetics, Mishima 411-8540, Japan.ORCID 0000-0001-6706-0487
RIKEN Center for Sustainable Resource Science · JPNational Institute of Genetics · JPNational Institute for Basic Biology · JPTottori University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hibiscus trionum, commonly known as the 'Flower of an Hour', is an easily cultivated plant in the Malvaceae family that is widespread in tropical and temperate regions, including drylands. The purple base part of its petal exhibits structural colour due to the fine ridges on the epidermal cell surface, and the molecular mechanism of ridge formation has been actively investigated. We performed genome sequencing of H. trionum using a long-read sequencing technology with transcriptome and pathway analyses to identify candidate genes for fine structure formation. The ortholog of AtSHINE1, which is involved in the biosynthesis of cuticular wax in Arabidopsis thaliana, was significantly overexpressed in the iridescent tissue. In addition, orthologs of AtCUS2 and AtCYP77A, which contribute to cutin synthesis, were also overexpressed. Our results provide important insights into the formation of fine ridges on epidermal cells in plants using H. trionum as a model.

Indexed as

FlowersGenome, PlantHibiscusPlant EpidermisTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsPlant Proteinsflower iridescencegenomeHibiscus trionumridge structuretranscriptome

Identifiers

PMID37691489
PMCPMC10558197
OpenAlexW4386593241

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.