Evidence map›Paper›PMID 37691384›Full record

ArticleEpigenetics2023

Pleiotropic influence of DNA methylation QTLs on physiological and ageing traits.

Khyobeni Mozhui, Hyeonju Kim, Flavia Villani, Amin Haghani, Saunak Sen, Steve Horvath

Open access · diamondAbstract read
In one paragraph

Article in Epigenetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Khyobeni MozhuiDepartment of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN, USA.ORCID 0000-0002-6623-4112
Hyeonju KimDepartment of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN, USA.
Flavia VillaniDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA.ORCID 0000-0003-3633-0610
Amin HaghaniDepartment of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.
Saunak SenDepartment of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN, USA.ORCID 0000-0003-4519-6361
Steve HorvathDepartment of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.
University of Tennessee Health Science Center · USUniversity of California, Los Angeles · US

Funding

Translational Systems Genetics of Mitochondria, Metabolism, and AgingR01AG043930 · NIA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI WILLIAMS, ROBERT W. · 2013 to 2017
$2.5M
DNA methylation and gene expression study of aging and lifespan differencesR21AG055841 · NIA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI MOZHUI, KHYOBENI · 2017 to 2018
$418k
Functional genetic analysis of epigenetic age acceleration and the regulatory landscape of the methylomeR56AG066625 · NIA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI MOZHUI, KHYOBENI · 2022 to 2022
$315k
NIA NIH HHS R01 AG043930NIA NIH HHS R21 AG055841NIA NIH HHS R56 AG066625
6 · The paper itself

Abstract

DNA methylation is influenced by genetic and non-genetic factors. Here, we chart quantitative trait loci (QTLs) that modulate levels of methylation at highly conserved CpGs using liver methylome data from mouse strains belonging to the BXD family. A regulatory hotspot on chromosome 5 had the highest density of trans-acting methylation QTLs (trans-meQTLs) associated with multiple distant CpGs. We refer to this locus as meQTL.5a. Trans-modulated CpGs showed age-dependent changes and were enriched in developmental genes, including several members of the MODY pathway (maturity onset diabetes of the young). The joint modulation by genotype and ageing resulted in a more 'aged methylome' for BXD strains that inherited the DBA/2J parental allele at meQTL.5a. Further, several gene expression traits, body weight, and lipid levels mapped to meQTL.5a, and there was a modest linkage with lifespan. DNA binding motif and protein-protein interaction enrichment analyses identified the hepatic nuclear factor,

Indexed as

DNA MethylationQuantitative Trait LociAgedAgingAnimalsHumansLongevityMiceMice, Inbred DBAageingepigenomegeneticslifespanmetabolismMethylation

Identifiers

PMID37691384
PMCPMC10496549
OpenAlexW4386593147

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.