Evidence map›Paper›PMID 37689767›Full record

ArticleScientific data2023

Chromosome level genome assembly of colored calla lily (Zantedeschia elliottiana).

Yi Wang, Tuo Yang, Di Wang, Rongxin Gou, Yin Jiang, Guojun Zhang, Yuhong Zheng, Dan Gao, Liyang Chen, Xiuhai Zhang and 1 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  5. Article
  6. Review
  7. Review
  8. Article
  9. Genome-wide characterization ofFrontiers in plant science · 2025
    Article
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yi Wang *Institute of Grassland, Flowers and Ecology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.ORCID http://orcid.org/0009-0008-0971-8672
Tuo Yang *College of Horticulture, China Agricultural University, Beijing, 100193, China.ORCID http://orcid.org/0000-0001-5290-7454
Di WangInstitute of Grassland, Flowers and Ecology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Rongxin GouInstitute of Grassland, Flowers and Ecology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Yin JiangInstitute of Grassland, Flowers and Ecology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Guojun ZhangCollege of Horticultural Science & Technology, Hebei Key Laboratory of Horticultural Germplasm Excavation and Innovative Utilization/Hebei Higher Institute Application Technology Research and Development Center of Horticultural Plant Biological Breeding, Hebei Normal University of Science & Technology, Qinhuangdao, 66004, China.
Yuhong ZhengInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing Botanical Garden, Mem. Sun Yat-Sen, Nanjing, 210014, China.
Dan GaoSmartgenomics Technology Institute, Tianjin, 301700, China.
Liyang ChenSmartgenomics Technology Institute, Tianjin, 301700, China.
Xiuhai ZhangInstitute of Grassland, Flowers and Ecology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China. zhangxiuhai@baafs.net.cn.ORCID http://orcid.org/0000-0002-7854-6287
Zunzheng WeiInstitute of Grassland, Flowers and Ecology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China. weizunzheng@163.com.ORCID http://orcid.org/0000-0002-6017-2029

Funding

Beijing Academy of Agricultural and Forestry Sciences (BAAFS) KJCX20230108Beijing Academy of Agricultural and Forestry Sciences (BAAFS) KJCX20230801Beijing Academy of Agricultural and Forestry Sciences (BAAFS) KJCX20230811National Natural Science Foundation of China (National Science Foundation of China) 32071812
6 · The paper itself

Abstract

The colored calla lily is an ornamental floral plant native to southern Africa, belonging to the Zantedeschia genus of the Araceae family. We generated a high-quality chromosome-level genome of the colored calla lily, with a size of 1,154 Mb and a contig N50 of 42 Mb. We anchored 98.5% of the contigs (1,137 Mb) into 16 pseudo-chromosomes, and identified 60.18% of the sequences (694 Mb) as repetitive sequences. Functional annotations were assigned to 95.1% of the predicted protein-coding genes (36,165). Additionally, we annotated 469 miRNAs, 1,652 tRNAs, 10,033 rRNAs, and 1,677 snRNAs. Furthermore, Gypsy-type LTR retrotransposons insertions in the genome are the primary factor causing significant genome size variation in Araceae species. This high-quality genome assembly provides valuable resources for understanding genome size differences within the Araceae family and advancing genomic research on colored calla lily.

Indexed as

Genome, PlantZantedeschiaAfrica, SouthernAraceaeChromosomes

Identifiers

PMID37689767
PMCPMC10492805

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.