Evidence map›Paper›PMID 37688361›Full record

SynthesisUnited European gastroenterology journal2023

A pilot genome-wide association study meta-analysis of gastroparesis.

Leticia Camargo Tavares, Tenghao Zheng, Madeline Kwicklis, Emily Mitchell, Anita Pandit, Suraj Pullapantula, Cheryl Bernard, Maris Teder-Laving, Francine Z Marques, Tonu Esko and 15 more

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in United European gastroenterology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 6 citations in OpenAlex.

  1. A pilot genome-wide association study meta-analysis of gastroparesis.United European gastroenterology journal · 2023
    Pooled it
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 15 institutions in 5 countries.

Leticia Camargo TavaresSchool of Biological Sciences, Monash University, Melbourne, Victoria, Australia.
Tenghao ZhengSchool of Biological Sciences, Monash University, Melbourne, Victoria, Australia.
Madeline KwicklisDepartment of Biostatistics, University of Michigan, Ann Arbor, Michigan, USA.
Emily MitchellJohns Hopkins University Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, USA.
Anita PanditDepartment of Biostatistics, University of Michigan, Ann Arbor, Michigan, USA.
Suraj PullapantulaMayo Clinic, Rochester, Minnesota, USA.
Cheryl BernardMayo Clinic, Rochester, Minnesota, USA.
Maris Teder-LavingInstitute of Genomics, University of Tartu, Tartu, Estonia.
Francine Z MarquesSchool of Biological Sciences, Monash University, Melbourne, Victoria, Australia.
Tonu EskoInstitute of Genomics, University of Tartu, Tartu, Estonia.
Braden KuoMassachusetts General Hospital, Boston, Massachusetts, USA.
Robert J ShulmanBaylor College of Medicine, Houston, Texas, USA.
Bruno P ChumpitaziBaylor College of Medicine, Houston, Texas, USA.
Kenneth L KochWake Forest University, Winston-Salem, North Carolina, USA.
Irene SarosiekTexas Tech University Health Sciences Center, El Paso, Texas, USA.
Thomas L AbellUniversity of Louisville, Louisville, Kentucky, USA.
Richard W McCallumTexas Tech University Health Sciences Center, El Paso, Texas, USA.
Henry P ParkmanTemple University, Philadelphia, Pennsylvania, USA.
Pankaj J PasrichaMayo Clinic, Phoenix, Arizona, USA.
Frank A HamiltonNational Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, Maryland, USA.
James TonasciaJohns Hopkins University Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, USA.
Matthew ZawistowskiDepartment of Biostatistics, University of Michigan, Ann Arbor, Michigan, USA.
Gianrico FarrugiaMayo Clinic, Rochester, Minnesota, USA.ORCID 0000-0003-3473-5235
Madhusudan GroverMayo Clinic, Rochester, Minnesota, USA.ORCID 0000-0001-5092-0831
Mauro D'AmatoSchool of Biological Sciences, Monash University, Melbourne, Victoria, Australia.
Mayo Clinic · USUniversity of Michigan · USBaylor College of Medicine · USJohns Hopkins University · USMonash University · AUTexas Tech University · USUniversity of Tartu · EEBaker Heart and Diabetes Institute · AUIkerbasque · ESMassachusetts General Hospital · USMayo Clinic Hospital · USNational Institute of Diabetes and Digestive and Kidney Diseases · USTemple University · USUniversity of Louisville · USWake Forest University · US

Funding

Mayo Clinic Center for Translational Science ActivitiesUL1TR000135 · NCATS · MAYO CLINIC ROCHESTER · PI KHOSLA, SUNDEEP · 2012 to 2015
$41.2M
PGpR2 Year 4 Supplement for the Scientific Data Research Center (SDRC) of the GpCRC 4U24DK074008 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI David M Shade · 2017 to 2026
$11.7M
Subtypes of GastroparesisU01DK073974 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI Baharak Moshiree · 2006 to 2026
$7.4M
Temple University Gastroparesis Clinical CenterU01DK073975 · NIDDK · TEMPLE UNIV OF THE COMMONWEALTH · PI HENRY PAUL PARKMAN · 2006 to 2026
$7.4M
U of L Clinical Center to Investigate the Pathogenesis, Etiology, and Treatment of Gastroparesis through the NIDDK Gastroparesis ConsortiumU01DK074007 · NIDDK · UNIVERSITY OF MISSISSIPPI MED CTR · PI Thomas Lyman Abell · 2006 to 2026
$7.0M
Molecular Approaches to Pathogenesis/Therapy in GastropaU01DK073983 · NIDDK · UNIVERSITY OF TEXAS MED BR GALVESTON · PI PANKAJ J PASRICHA · 2006 to 2026
$6.8M
The GpCRC Pediatric Gastroparesis Registry 2 (PGpR2): Characterization and Clinical Course of Symptoms and Gastric Emptying in Pediatric, Adolescent, and Young Adult Participants with Symptoms of GastU01DK074035 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Irene Sarosiek · 2008 to 2026
$6.7M
Institute for Clinical and Translational ResearchUL1TR000424 · NCATS · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2012 to 2012
$6.0M
Advancing Clinical Science in Pediatric GastroparesisU01DK112194 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Bruno Pedro Chumpitazi, Geoffrey A Preidis · 2016 to 2026
$5.3M
New England Gastropareis Consortium: Neurobiology of GastroparesisU01DK112193 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Helen Burton Murray, Braden Kuo · 2016 to 2026
$4.8M
Visceral Afferent Dysfunction in Diabetic GastropathyU01DK073985 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HASLER, WILLIAM L · 2006 to 2015
$2.7M
NCATS NIH HHS UL1 TR000135NCATS NIH HHS UL1 TR000424NIDDK NIH HHS U01 DK073974NIDDK NIH HHS U01 DK073975NIDDK NIH HHS U01 DK073983NIDDK NIH HHS U01 DK073985NIDDK NIH HHS U01 DK074007NIDDK NIH HHS U01 DK074035NIDDK NIH HHS U01 DK112193NIDDK NIH HHS U01 DK112194NIDDK NIH HHS U24 DK074008
6 · The paper itself

Abstract

backgroundGastroparesis (GP) is characterized by delayed gastric emptying in the absence of mechanical obstruction.

objectiveGenetic predisposition may play a role; however, investigation at the genome-wide level has not been performed.

methodsWe carried out a genome-wide association study (GWAS) meta-analysis on (i) 478 GP patients from the National Institute of Diabetes and Digestive and Kidney Diseases Gastroparesis Clinical Research Consortium (GpCRC) compared to 9931 population-based controls from the University of Michigan Health and Retirement Study; and (ii) 402 GP cases compared to 48,340 non-gastroparesis controls from the Michigan Genomics Initiative. Associations for 5,811,784 high-quality SNPs were tested on a total of 880 GP patients and 58,271 controls, using logistic mixed models adjusted for age, sex, and principal components. Gene mapping was obtained based on genomic position and expression quantitative trait loci, and a gene-set network enrichment analysis was performed. Genetic associations with clinical data were tested in GpCRC patients. Protein expression of selected candidate genes was determined in full thickness gastric biopsies from GpCRC patients and controls.

resultsWhile no SNP associations were detected at strict significance (p ≤ 5 × 10

conclusionWe report preliminary GWAS findings for GP, which highlight candidate genes and pathways related to immune and sensory-motor dysregulation. Larger studies are needed to validate and expand these findings in independent datasets.

Indexed as

GastroparesisGenome-Wide Association StudyAbdominal PainGenetic Predisposition to DiseaseHumansabdominal paindelayed gastric emptyingdiabetesenteric nervous systemgastroparesisgeneticsimmune dysregulationinflammationmotor functionPXDNL

Identifiers

PMID37688361
PMCPMC10576603
OpenAlexW4386564483

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.