Evidence map›Paper›PMID 37686682›Full record

ArticleCancers2023

Multi-omics Characterization of Response to PD-1 Inhibitors in Advanced Melanoma.

Lucía Trilla-Fuertes, Angelo Gámez-Pozo, Guillermo Prado-Vázquez, Rocío López-Vacas, Virtudes Soriano, Fernando Garicano, M José Lecumberri, María Rodríguez de la Borbolla, Margarita Majem, Elisabeth Pérez-Ruiz and 12 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 16 institutions in 2 countries.

Lucía Trilla-FuertesMolecular Oncology Laboratory, Hospital Universitario La Paz-IdiPAZ, 28046 Madrid, Spain.ORCID 0000-0002-4452-3474
Angelo Gámez-PozoMolecular Oncology Laboratory, Hospital Universitario La Paz-IdiPAZ, 28046 Madrid, Spain.ORCID 0000-0002-8931-0624
Guillermo Prado-VázquezMolecular Oncology Laboratory, Hospital Universitario La Paz-IdiPAZ, 28046 Madrid, Spain.
Rocío López-VacasMolecular Oncology Laboratory, Hospital Universitario La Paz-IdiPAZ, 28046 Madrid, Spain.
Virtudes SorianoInstituto Valenciano de Oncología, 46009 Valencia, Spain.
Fernando GaricanoSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.
M José LecumberriSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.
María Rodríguez de la BorbollaSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.
Margarita MajemSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.ORCID 0000-0002-9919-7485
Elisabeth Pérez-RuizSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.ORCID 0000-0001-7204-0800
María González-CaoSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.
Juana OramasSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.
Alejandra MagdalenoSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.
Joaquín FraSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.ORCID 0000-0003-4436-1572
Alfonso Martín-CarniceroSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.ORCID 0000-0002-8564-2875
Mónica CorralSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.
Teresa PuértolasSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.
Ricardo Ramos-RuizGenomics Unit, Parque Científico de Madrid, 28049 Madrid, Spain.ORCID 0000-0002-6331-9786
Antje DittmannFunctional Genomics Center Zurich, University/ETH Zurich, 8092 Zurich, Switzerland.ORCID 0000-0002-2570-5192
Paolo NanniFunctional Genomics Center Zurich, University/ETH Zurich, 8092 Zurich, Switzerland.ORCID 0000-0001-8429-3557
Juan Ángel Fresno VaraMolecular Oncology Laboratory, Hospital Universitario La Paz-IdiPAZ, 28046 Madrid, Spain.ORCID 0000-0003-1527-1252
Enrique EspinosaSpanish Melanoma Group (GEM), 08024 Barcelona, Spain.ORCID 0000-0001-6562-7902
Hospital Universitario La Paz · ESETH Zurich · CHComplejo Hospitalario de Navarra · ESFundación Instituto Valenciano de Oncología · ESGEICAM – Spanish Breast Cancer Group · ESHospital Clínico Universitario Lozano Blesa · ESHospital de Galdakao · ESHospital de Sant Pau · ESHospital General Universitario de Elche · ESHospital San Pedro · ESHospital Universitario de Canarias · ESHospital Universitario de Valme · ESHospital Universitario Dexeus · ESHospital Universitario Miguel Servet · ESHospital Universitario Río Hortega · ESUnidades Centrales Científico-Técnicas · ES

Funding

Consejería de Educación y Deporte IND2017/BMD7783
6 · The paper itself

Abstract

Immunotherapy improves the survival of patients with advanced melanoma, 40% of whom become long-term responders. However, not all patients respond to immunotherapy. Further knowledge of the processes involved in the response and resistance to immunotherapy is still needed. In this study, clinical paraffin samples from fifty-two advanced melanoma patients treated with anti-PD-1 inhibitors were assessed via high-throughput proteomics and RNA-seq. The obtained proteomics and transcriptomics data were analyzed using multi-omics network analyses based on probabilistic graphical models to identify those biological processes involved in the response to immunotherapy. Additionally, proteins related to overall survival were studied. The activity of the node formed by the proteins involved in protein processing in the endoplasmic reticulum and antigen presentation machinery was higher in responders compared to non-responders; the activity of the immune and inflammatory response node was also higher in those with complete or partial responses. A predictor for overall survival based on two proteins (AMBP and PDSM5) was defined. In summary, the response to anti-PD-1 therapy in advanced melanoma is related to protein processing in the endoplasmic reticulum, and also to genes involved in the immune and inflammatory responses. Finally, a two-protein predictor can define survival in advanced disease. The molecular characterization of the mechanisms involved in the response and resistance to immunotherapy in melanoma leads the way to establishing therapeutic alternatives for patients who will not respond to this treatment.

Indexed as

immunotherapy responseinflammatory responsemelanomamulti-omicsprotein processing in the endoplasmic reticulum

Identifiers

PMID37686682
PMCPMC10486782
OpenAlexW4386410525

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.