Evidence map›Paper›PMID 37686469›Full record

ArticleInternational journal of molecular sciences2023

Molecular Regulatory Network of Anthocyanin Accumulation in Black Radish Skin as Revealed by Transcriptome and Metabonome Analysis.

Jing Zhang, Zi-Xuan Zhang, Bo-Yue Wen, Ya-Jie Jiang, Xia He, Rui Bai, Xin-Ling Zhang, Wen-Chen Chai, Xiao-Yong Xu, Jin Xu and 2 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Jing ZhangCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Zi-Xuan ZhangCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Bo-Yue WenCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Ya-Jie JiangCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Xia HeCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Rui BaiCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Xin-Ling ZhangInstitute of Vegetable, Zhengzhou 450005, China.
Wen-Chen ChaiCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Xiao-Yong XuCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Jin XuCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Lei-Ping HouCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Mei-Lan LiCollege of Horticulture, Shanxi Agricultural University, Taigu, Jinzhong 030801, China.
Shanxi Agricultural University · CNNanjing Institute of Vegetable Science · CN

Funding

the Key Projects of Key R & D Program of Shanxi Province 201703D211001-04-01the Natural Science Foundation of Shanxi Province 202203021211280
6 · The paper itself

Abstract

To understand the coloring mechanism in black radish, the integrated metabolome and transcriptome analyses of root skin from a black recombinant inbred line (RIL 1901) and a white RIL (RIL 1911) were carried out. A total of 172 flavonoids were detected, and the analysis results revealed that there were 12 flavonoid metabolites in radish root skin, including flavonols, flavones, and anthocyanins. The relative concentrations of most flavonoids in RIL 1901 were higher than those in RIL 1911. Meanwhile, the radish root skin also contained 16 types of anthocyanins, 12 of which were cyanidin and its derivatives, and the concentration of cyanidin 3-o-glucoside was very high at different development stages of black radish. Therefore, the accumulation of cyanidin and its derivatives resulted in the black root skin of radish. In addition, a module positively related to anthocyanin accumulation and candidate genes that regulate anthocyanin synthesis was identified by the weighted gene co-expression network analysis (WGCNA). Among them, structural genes (

Indexed as

AnthocyaninsRaphanusFlavonoidsGene Expression ProfilingTranscriptomeAnthocyaninsFlavonoidsanthocyaninsblack root skinmetabolomeradishtranscriptomeWGCNA

Identifiers

PMID37686469
PMCPMC10563070
OpenAlexW4386423550

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.