Evidence map›Paper›PMID 37686055›Full record

ArticleInternational journal of molecular sciences2023

Conservative Tryptophan Residue in the Vicinity of an Active Site of the M15 Family l,d-Peptidases: A Key Element in the Catalysis.

Galina V Mikoulinskaia, Dmitry A Prokhorov, Sergei V Chernyshov, Daria S Sitnikova, Arina G Arakelian, Vladimir N Uversky

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Galina V MikoulinskaiaBranch of Shemyakin & Ovchinnikov's Institute of Bioorganic Chemistry, RAS, Prospekt Nauki, 6, 142290 Pushchino, Moscow Region, Russia.ORCID 0000-0003-0596-0003
Dmitry A ProkhorovInstitute of Theoretical and Experimental Biophysics, RAS, Institutskaya ul., 3, 142290 Pushchino, Moscow Region, Russia.ORCID 0000-0002-9366-1216
Sergei V ChernyshovBranch of Shemyakin & Ovchinnikov's Institute of Bioorganic Chemistry, RAS, Prospekt Nauki, 6, 142290 Pushchino, Moscow Region, Russia.
Daria S SitnikovaBranch of Shemyakin & Ovchinnikov's Institute of Bioorganic Chemistry, RAS, Prospekt Nauki, 6, 142290 Pushchino, Moscow Region, Russia.
Arina G ArakelianBranch of Shemyakin & Ovchinnikov's Institute of Bioorganic Chemistry, RAS, Prospekt Nauki, 6, 142290 Pushchino, Moscow Region, Russia.
Vladimir N UverskyLaboratory of New Methods in Biology, Institute for Biological Instrumentation, Russian Academy of Sciences, Federal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", 142290 Pushchino, Moscow Region, Russia.ORCID 0000-0002-4037-5857
Institute of Bioorganic Chemistry · RUInstitute of Theoretical and Experimental Biophysics · RUUniversity of South Florida · US

Funding

Russian Science Foundation 23-24-00210
6 · The paper itself

Abstract

Bioinformatics analysis of the sequences of orthologous zinc-containing peptidases of the M15_C subfamily revealed the presence of a conserved tryptophan residue near the active site, which is not involved in the formation of the protein core. Site-directed mutagenesis of this Trp114/109 residue using two representatives of the family, l-alanoyl-d-glutamate peptidases of bacteriophages T5 (calcium-activated EndoT5) and RB49 (EndoRB49, without ion regulation) as examples, and further analysis of the

Indexed as

Peptide HydrolasesTryptophanCatalysisCatalytic DomainGalaninGlutamic AcidSubstance PGalaningalantideGlutamic AcidPeptide HydrolasesSubstance PTryptophanbacteriophagecalciumcatalysisl,d-peptidasesubstrate binding

Identifiers

PMID37686055
PMCPMC10487532
OpenAlexW4386221467

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.