ArticleScientific data2023
A chromosome-level genome assembly of the darkbarbel catfish Pelteobagrus vachelli.
Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed, 6 citations in OpenAlex.
- Telomere-to-telomere-level genome assembly and annotation of the Zi goose Anser cygnoides.Scientific data · 2026Article
- Chromosome level genome and full length transcriptome of long whiskers catfish, Mystus gulio (Hamilton, 1822).Scientific data · 2026Article
- Low-Temperature Stress-Induced Hepatic Injury in Darkbarbel Catfish (Antioxidants (Basel, Switzerland) · 2025Article
- Spatiotemporal Dynamics of Pro-Inflammatory Mediator Expression inAnimals : an open access journal from MDPI · 2025Article
- A chromosome-level genome assembly of the male darkbarbel catfish (Pelteobagrus vachelli) using PacBio HiFi and Hi-C data.Scientific data · 2025Article
- Chromosome-level genome assembly and annotation of the yellow grouper, Epinephelus awoara.Scientific data · 2024Article
- A chromosome-level genome assembly of the darkbarbel catfish Pelteobagrus vachelli.Scientific data · 2023Article
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The darkbarbel catfish (Pelteobagrus vachelli), an economically important aquaculture species in China, is extensively employed in hybrid yellow catfish production due to its superior growth rate. However, information on its genome has been limited, constraining further genetic studies and breeding programs. Leveraging the power of PacBio long-read sequencing and Hi-C technologies, we present a high-quality, chromosome-level genome assembly for the darkbarbel catfish. The resulting assembly spans 692.10 Mb, with an impressive 99.9% distribution over 26 chromosomes. The contig N50 and scaffold N50 are 13.30 Mb and 27.55 Mb, respectively. The genome is predicted to contain 22,109 protein-coding genes, with 96.1% having functional annotations. Repeat elements account for approximately 35.79% of the genomic landscape. The completeness of darkbarbel catfish genome assembly is highlighted by a BUSCO score of 99.07%. This high-quality genome assembly provides a critical resource for future hybrid catfish breeding, comparative genomics, and evolutionary studies in catfish and other related species.
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