Evidence map›Paper›PMID 37683000›Full record

ArticleScience advances2023

Epigenetic variations are more substantial than genetic variations in rapid adaptation of oyster to Pacific oyster mortality syndrome.

Janan Gawra, Alejandro Valdivieso, Fabrice Roux, Martin Laporte, Julien de Lorgeril, Yannick Gueguen, Mathilde Saccas, Jean-Michel Escoubas, Caroline Montagnani, Delphine Destoumieux-Garzόn and 10 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
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  10. Cross-talk and mutual shaping between the immune system and the microbiota during an oyster's life.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 4 countries.

Janan GawraIHPE, Université de Perpignan Via Domitia, CNRS, Ifremer, Université de Montpellier, Perpignan, France.ORCID 0000-0001-5889-9504
Alejandro ValdiviesoIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, Montpellier, France.ORCID 0000-0002-6653-1491
Fabrice RouxLIPME, INRAE, CNRS, Université de Toulouse, Castanet-Tolosan, France.ORCID 0000-0001-8059-5638
Martin LaporteDivision de l'expertise sur la faune Aquatique, Ministère des Forêts, de la Faune et des Parcs (MFFP), 880 chemin Sainte-Foy, G1S 4X4 Québec, Québec, Canada.ORCID 0000-0002-0622-123X
Julien de LorgerilIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, Montpellier, France.ORCID 0000-0002-6400-5455
Yannick GueguenIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, Montpellier, France.ORCID 0000-0002-8749-9582
Mathilde SaccasIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, Montpellier, France.
Jean-Michel EscoubasIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, Montpellier, France.ORCID 0000-0002-6138-1148
Caroline MontagnaniIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, Montpellier, France.ORCID 0000-0002-0861-7967
Delphine Destoumieux-GarzόnIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, Montpellier, France.ORCID 0000-0002-8793-9138
Franck LagardeMARBEC, Université de Montpellier, CNRS, Ifremer, IRD, Sète, France.ORCID 0000-0002-3468-9593
Marc A LeroyIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, Montpellier, France.
Philippe HaffnerIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, Montpellier, France.
Bruno PettonUniversité de Brest, Ifremer, CNRS, IRD, LEMAR, F-29280 Plouzané, France.ORCID 0000-0002-4169-2811
Céline CosseauIHPE, Université de Perpignan Via Domitia, CNRS, Ifremer, Université de Montpellier, Perpignan, France.ORCID 0000-0002-0780-8980
Benjamin MorgaIfremer, ASIM, Adaptation Santé des Invertébrés Marins, La Tremblade, France.ORCID 0000-0002-3196-4537
Lionel DégremontIfremer, ASIM, Adaptation Santé des Invertébrés Marins, La Tremblade, France.ORCID 0000-0001-6759-6791
Guillaume MittaIHPE, Université de Perpignan Via Domitia, CNRS, Ifremer, Université de Montpellier, Perpignan, France.ORCID 0000-0003-1188-1467
Christoph GrunauIHPE, Université de Perpignan Via Domitia, CNRS, Ifremer, Université de Montpellier, Perpignan, France.ORCID 0000-0002-2161-412X
Jeremie Vidal-DupiolIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, Montpellier, France.ORCID 0000-0002-0577-2953
Centre National de la Recherche Scientifique · FRIfremer · FRMinistère des Ressources naturelles et des Forêts · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Disease emergence is accelerating with global changes. Understanding by which mechanisms host populations can rapidly adapt will be crucial for management practices. Pacific oyster mortality syndrome (POMS) imposes a substantial and recurrent selective pressure on oyster populations, and rapid adaptation may arise through genetics and epigenetics. In this study, we used (epi)genome-wide association mapping to show that oysters differentially exposed to POMS displayed genetic and epigenetic signatures of selection. Consistent with higher resistance to POMS, the genes targeted included many genes in several pathways related to immunity. By combining correlation, DNA methylation quantitative trait loci, and variance partitioning, we revealed that a third of phenotypic variation was explained by interactions between the genetic and epigenetic information, ~14% by the genome, and up to 25% by the epigenome alone. Similar to genetically based adaptation, epigenetic mechanisms notably governing immune responses can contribute substantially to the rapid adaptation of hosts to emerging infectious diseases.

Indexed as

Genome-Wide Association StudyOstreidaeAcclimatizationAnimalsEpigenesis, GeneticGenetic VariationSyndrome

Identifiers

PMID37683000
PMCPMC10491289
OpenAlexW4386533766

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.