Evidence map›Paper›PMID 37680476›Full record

ArticleiScience2023

Overfit deep neural network for predicting drug-target interactions.

Xiao Xiaolin, Liu Xiaozhi, He Guoping, Liu Hongwei, Guo Jinkuo, Bian Xiyun, Tian Zhen, Ma Xiaofang, Li Yanxia, Xue Na and 7 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Xiao XiaolinDepartment of Cardiology, Tianjin Fifth Central Hospital, Tianjin, China.
Liu XiaozhiTianjin Key Laboratory of Epigenetics for Organ Development of Premature Infants, Tianjin Fifth Central Hospital, Tianjin, China.
He GuopingGeriatrics Department, Traditional Chinese Medicine Hospital of Binhai New Area, Tianjin, China.
Liu HongweiSchool of Clinical Medicine, North China University of Science and Technology, Tangshan, Hebei, China.
Guo JinkuoTianjin Key Laboratory of Epigenetics for Organ Development of Premature Infants, Tianjin Fifth Central Hospital, Tianjin, China.
Bian XiyunTianjin Key Laboratory of Epigenetics for Organ Development of Premature Infants, Tianjin Fifth Central Hospital, Tianjin, China.
Tian ZhenDeepwater Technology Research Institute, China National Offshore Oil Corporation, Tianjin, China.
Ma XiaofangTianjin Key Laboratory of Epigenetics for Organ Development of Premature Infants, Tianjin Fifth Central Hospital, Tianjin, China.
Li YanxiaTianjin Key Laboratory of Epigenetics for Organ Development of Premature Infants, Tianjin Fifth Central Hospital, Tianjin, China.
Xue NaTianjin Key Laboratory of Epigenetics for Organ Development of Premature Infants, Tianjin Fifth Central Hospital, Tianjin, China.
Zhang ChunyanTianjin Key Laboratory of Epigenetics for Organ Development of Premature Infants, Tianjin Fifth Central Hospital, Tianjin, China.
Gao RuiTianjin Key Laboratory of Epigenetics for Organ Development of Premature Infants, Tianjin Fifth Central Hospital, Tianjin, China.
Wang KuanDepartment of Cardiology, Tianjin Fifth Central Hospital, Tianjin, China.
Zhang ChengDepartment of Cardiology, Tianjin Fifth Central Hospital, Tianjin, China.
Wang CuancuanDepartment of Cardiology, Tianjin Fifth Central Hospital, Tianjin, China.
Liu MingyongTianjin Key Laboratory of Epigenetics for Organ Development of Premature Infants, Tianjin Fifth Central Hospital, Tianjin, China.
Du XinpingDepartment of Cardiology, Tianjin Fifth Central Hospital, Tianjin, China.
Fifth Tianjin Central Hospital · CNTianjin University of Science and Technology · CNChina National Offshore Oil Corporation (China) · CNTangshan People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drug-target interactions (DTIs) prediction is an important step in drug discovery. As traditional biological experiments or high-throughput screening are high cost and time-consuming, many deep learning models have been developed. Overfitting must be avoided when training deep learning models. We propose a simple framework, called OverfitDTI, for DTI prediction. In OverfitDTI, a deep neural network (DNN) model is overfit to sufficiently learn the features of the chemical space of drugs and the biological space of targets. The weights of trained DNN model form an implicit representation of the nonlinear relationship between drugs and targets. Performance of OverfitDTI on three public datasets showed that the overfit DNN models fit the nonlinear relationship with high accuracy. We identified fifteen compounds that interacted with TEK, a receptor tyrosine kinase contributing to vascular homeostasis, and the predicted AT9283 and dorsomorphin were experimentally demonstrated as inhibitors of TEK in human umbilical vein endothelial cells (HUVECs).

Indexed as

BiochemistryBiological sciencesMathematical biosciencesStructural biology

Identifiers

PMID37680476
PMCPMC10480310
OpenAlexW4385830569

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.