ArticleNature communications2023
Genomes of cultivated and wild Capsicum species provide insights into pepper domestication and population differentiation.
Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.
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79 citing papers in PubMed.
- Pileup-hi: an ultra-high-throughput, customizable alignment pileup program for large datasets.Bioinformatics (Oxford, England) · 2026Article
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- Evolution and domestication-trait associations of ultra-long centromere haplotypes in pepper plants.Nature ecology & evolution · 2026Article
- Graph-based pangenomics reveals the genetic basis of agronomic traits in tomato fruits.Horticulture research · 2026Article
- Structural Variation and Its Roles in Plant Genomes.Plants (Basel, Switzerland) · 2026Review
- Integrating speed breeding and genomic tools to accelerate genetic gain in chilli (Capsicum annuum L.).Journal of applied genetics · 2026Review
- Integrated transcriptome-metabolome analyses reveal regulatory networks underlying soluble solids accumulation in Capsicum chinense fruits.The Plant journal : for cell and molecular biology · 2026Article
- Next-Generation Metabolic Engineering of Capsaicinoids Biosynthesis in Chilli Pepper: Bridging Genomic Insights to Biotechnological Applications.Biotech (Basel (Switzerland)) · 2026Review
- Pangenomics for Agricultural Breeding: Construction Strategies, Evidence Integration, and Translational Constraints.Biology · 2026Review
- Polyphenolic Composition and Antioxidant Activities of Twelve Capsicum annuum Cultivars Revealed by RP-HPLC and Chemometric Analysis.Chemistry & biodiversity · 2026Article
- SCEA-YOLO: A General-Purpose Maturity Grading Model of Multi-Crop Greenhouse Robots.Plants (Basel, Switzerland) · 2026Article
- Origin and evolution ofHorticulture research · 2026Article
- Chromosome-level genome assemblies of Nicotiana attenuata (coyote tobacco) and Nicotiana obtusifolia (desert tobacco).Scientific data · 2026Article
- Integrated high-density genetic maps in multi-parent FBMC plant biology · 2026Article
- Library Preparation Biases Plant Virome Detection: Poly(A) mRNA Enrichment vs. rRNA Depletion in Pepper and Garlic.International journal of molecular sciences · 2026Article
- From High-Density Genomic Mapping to Precision Molecular Breeding: A Comprehensive Review ofGenes · 2026Review
- Sub-pangenome analysis reveals structural variants associated with fruit color and bacterial wilt resistance in eggplant.Nature communications · 2026Article
- Comprehensive Morpho-Functional Profiling of Peruvian AndeanPlants (Basel, Switzerland) · 2026Article
- Plant domestication revisited: Genomic insights into origins, mechanisms, and convergent evolution.iScience · 2026Review
- Dynamics of genome evolution in the era of pangenome analysis.Cell genomics · 2026Review
19 more citing papers are in PubMed but not listed here.
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26 authors.
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Abstract
Pepper (Capsicum spp.) is one of the earliest cultivated crops and includes five domesticated species, C. annuum var. annuum, C. chinense, C. frutescens, C. baccatum var. pendulum and C. pubescens. Here, we report a pepper graph pan-genome and a genome variation map of 500 accessions from the five domesticated Capsicum species and close wild relatives. We identify highly differentiated genomic regions among the domesticated peppers that underlie their natural variations in flowering time, characteristic flavors, and unique resistances to biotic and abiotic stresses. Domestication sweeps detected in C. annuum var. annuum and C. baccatum var. pendulum are mostly different, and the common domestication traits, including fruit size, shape and pungency, are achieved mainly through the selection of distinct genomic regions between these two cultivated species. Introgressions from C. baccatum into C. chinense and C. frutescens are detected, including those providing genetic sources for various biotic and abiotic stress tolerances.
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