Evidence map›Paper›PMID 37679343›Full record

ArticleNature communications2023

Heterogeneity in M. tuberculosis β-lactamase inhibition by Sulbactam.

Tek Narsingh Malla, Kara Zielinski, Luis Aldama, Sasa Bajt, Denisse Feliz, Brendon Hayes, Mark Hunter, Christopher Kupitz, Stella Lisova, Juraj Knoska and 19 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Whither the protein landscape?Structural dynamics (Melville, N.Y.) · 2025
    Article
  9. Review
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  11. A snapshot love story: what serial crystallography has done and will do for us.Acta crystallographica. Section D, Structural biology · 2024
    Review
  12. Scaling and Merging Time-Resolved Laue Data with Variational Inference.bioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. The time revolution in macromolecular crystallography.Structural dynamics (Melville, N.Y.) · 2024
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors at 9 institutions in 3 countries.

Tek Narsingh MallaPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.ORCID http://orcid.org/0000-0002-1387-0801
Kara ZielinskiSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0002-9907-5058
Luis AldamaDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Sasa BajtThe Hamburg Centre for Ultrafast Imaging, Hamburg, Germany.
Denisse FelizDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Brendon HayesLinac Coherent Light Source LCLS, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Mark HunterLinac Coherent Light Source LCLS, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0002-0110-7075
Christopher KupitzLinac Coherent Light Source LCLS, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Stella LisovaLinac Coherent Light Source LCLS, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Juraj KnoskaCenter for Free-Electron Laser Science CFEL, Deutsches Elektronen Synchrotron, Hamburg, Germany.
Jose Manuel Martin-GarciaDepartment of Crystallography and Structural Biology, Institute of Physical Chemistry Blas Cabrera, Spanish National Research Council (CSIC), Madrid, Spain.ORCID http://orcid.org/0000-0002-4558-3858
Valerio MarianiLinac Coherent Light Source LCLS, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Suraj PandeyPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.ORCID http://orcid.org/0000-0002-7097-2185
Ishwor PoudyalPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
Raymond G SierraLinac Coherent Light Source LCLS, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0002-6253-8282
Alexandra TolstikovaDeutsches Elektronen-Synchrotron DESY, Hamburg, Germany.
Oleksandr YefanovCenter for Free-Electron Laser Science CFEL, Deutsches Elektronen Synchrotron, Hamburg, Germany.
Chung Hong YoonLinac Coherent Light Source LCLS, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0003-1482-1662
Abbas OurmazdPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.ORCID http://orcid.org/0000-0001-9946-3889
Petra FrommeSchool of Molecular Sciences and Biodesign Center for Applied Structural Discovery, 20 Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0000-0003-0953-4909
Peter SchwanderPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.ORCID http://orcid.org/0000-0003-2350-8838
Anton BartyDeutsches Elektronen-Synchrotron DESY, Hamburg, Germany.
Henry N ChapmanThe Hamburg Centre for Ultrafast Imaging, Hamburg, Germany.ORCID http://orcid.org/0000-0002-4655-1743
Emina A StojkovicDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-4971-5213
Alexander BatyukLinac Coherent Light Source LCLS, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0002-9393-2880
Sébastien BoutetLinac Coherent Light Source LCLS, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0003-3928-1244
George N PhillipsDepartment of BioSciences, Rice University, Houston, TX, USA.ORCID http://orcid.org/0000-0002-4171-4603
Lois PollackSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0002-9366-4396
Marius SchmidtPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA. smarius@uwm.edu.ORCID http://orcid.org/0000-0002-0962-9468
SLAC National Accelerator Laboratory · USUniversity of Wisconsin–Milwaukee · USUniversität Hamburg · DENortheastern Illinois University · USCornell University · USDeutsches Elektronen-Synchrotron DESY · DEArizona State University · USConsejo Superior de Investigaciones Científicas · ESRice University · US

Funding

TRAINING IN MOLECULAR PHYSICS OF BIOLOGICAL SYSTEMST32GM008267 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WANG, MICHELLE D. · 1988 to 2021
$9.6M
Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
NU-STARS for Northeastern Illinois Student Training in Academic Research in the SciencesT34GM105549 · NIGMS · NORTHEASTERN ILLINOIS UNIVERSITY · PI CHURCH, RUTH B, HIBDON, JOSEPH EDWARD · 2014 to 2023
$2.8M
NIGMS NIH HHS R01 GM095583NIGMS NIH HHS T32 GM008267NIGMS NIH HHS T34 GM105549
6 · The paper itself

Abstract

For decades, researchers have elucidated essential enzymatic functions on the atomic length scale by tracing atomic positions in real-time. Our work builds on possibilities unleashed by mix-and-inject serial crystallography (MISC) at X-ray free electron laser facilities. In this approach, enzymatic reactions are triggered by mixing substrate or ligand solutions with enzyme microcrystals. Here, we report in atomic detail (between 2.2 and 2.7 Å resolution) by room-temperature, time-resolved crystallography with millisecond time-resolution (with timepoints between 3 ms and 700 ms) how the Mycobacterium tuberculosis enzyme BlaC is inhibited by sulbactam (SUB). Our results reveal ligand binding heterogeneity, ligand gating, cooperativity, induced fit, and conformational selection all from the same set of MISC data, detailing how SUB approaches the catalytic clefts and binds to the enzyme noncovalently before reacting to a trans-enamine. This was made possible in part by the application of singular value decomposition to the MISC data using a program that remains functional even if unit cell parameters change up to 3 Å during the reaction.

Indexed as

Mycobacterium tuberculosisTuberculosisbeta-LactamasesHumansLigandsSulbactambeta-LactamasesLigandsSulbactam

Identifiers

PMID37679343
PMCPMC10485065
OpenAlexW4386526707

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.