Evidence map›Paper›PMID 37678266›Full record

ReviewPhysical biology2023

Quantitative insights in tissue growth and morphogenesis with optogenetics.

Mayesha Sahir Mim, Caroline Knight, Jeremiah J Zartman

Abstract readReview
In one paragraph

Review in Physical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Signal control during tissue regeneration in adult animals.Nature reviews. Molecular cell biology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Mayesha Sahir MimChemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN 46556, United States of America.ORCID 0000-0002-8488-6181
Caroline KnightChemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN 46556, United States of America.
Jeremiah J ZartmanChemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN 46556, United States of America.ORCID 0000-0001-7195-7203

Funding

Regulation and function of multicellular calcium signaling in epithelial growth and regenerationR35GM124935 · NIGMS · UNIVERSITY OF NOTRE DAME · PI ZARTMAN, JEREMIAH JAMES · 2017 to 2021
$1.9M
NIGMS NIH HHS R35 GM124935
6 · The paper itself

Abstract

Cells communicate with each other to jointly regulate cellular processes during cellular differentiation and tissue morphogenesis. This multiscale coordination arises through the spatiotemporal activity of morphogens to pattern cell signaling and transcriptional factor activity. This coded information controls cell mechanics, proliferation, and differentiation to shape the growth and morphogenesis of organs. While many of the molecular components and physical interactions have been identified in key model developmental systems, there are still many unresolved questions related to the dynamics involved due to challenges in precisely perturbing and quantitatively measuring signaling dynamics. Recently, a broad range of synthetic optogenetic tools have been developed and employed to quantitatively define relationships between signal transduction and downstream cellular responses. These optogenetic tools can control intracellular activities at the single cell or whole tissue scale to direct subsequent biological processes. In this brief review, we highlight a selected set of studies that develop and implement optogenetic tools to unravel quantitative biophysical mechanisms for tissue growth and morphogenesis across a broad range of biological systems through the manipulation of morphogens, signal transduction cascades, and cell mechanics. More generally, we discuss how optogenetic tools have emerged as a powerful platform for probing and controlling multicellular development.

Indexed as

Biological PhenomenaOptogeneticsCell CommunicationMorphogenesisSignal Transductionlight-induciblemorphogenesisoptogeneticssignalingtissue engineering

Identifiers

PMID37678266
PMCPMC10594237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.