Evidence map›Paper›PMID 37675606›Full record

ArticleMolecular biology and evolution2023

Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization.

Yixuan Yang, Tanchumin Xu, Gavin Conant, Hirohisa Kishino, Jeffrey L Thorne, Xiang Ji

Open access · goldAbstract read
In one paragraph

Article in Molecular biology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yixuan YangBioinformatics Research Center, North Carolina State University, Raleigh, NC, USA.
Tanchumin XuBioinformatics Research Center, North Carolina State University, Raleigh, NC, USA.
Gavin ConantBioinformatics Research Center, North Carolina State University, Raleigh, NC, USA.
Hirohisa KishinoAI/Data Science Social Implementation Laboratory, Chuo University, Tokyo, Japan.
Jeffrey L ThorneBioinformatics Research Center, North Carolina State University, Raleigh, NC, USA.
Xiang JiDepartment of Mathematics, Tulane University, New Orleans, LA, USA.
North Carolina State University · USChuo University · JPTulane University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Following a duplication, the resulting paralogs tend to diverge. While mutation and natural selection can accelerate this process, they can also slow it. Here, we quantify the paralog homogenization that is caused by point mutations and interlocus gene conversion (IGC). Among 164 duplicated teleost genes, the median percentage of postduplication codon substitutions that arise from IGC rather than point mutation is estimated to be between 7% and 8%. By differentiating between the nonsynonymous codon substitutions that homogenize the protein sequences of paralogs and the nonhomogenizing nonsynonymous substitutions, we estimate the homogenizing nonsynonymous rates to be higher for 163 of the 164 teleost data sets as well as for all 14 data sets of duplicated yeast ribosomal protein-coding genes that we consider. For all 14 yeast data sets, the estimated homogenizing nonsynonymous rates exceed the synonymous rates.

Indexed as

Gene ConversionMagnoliopsidaAmino Acid SequenceGenes, DuplicateSaccharomyces cerevisiaeSelection, Geneticinterlocus gene conversionparalog homogenizationteleost genome duplication

Identifiers

PMID37675606
PMCPMC10503786
OpenAlexW4386504347

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.