Evidence map›Paper›PMID 37673908›Full record

ArticleNature communications2023

Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains.

Harold P Hodgins, Pengsheng Chen, Briallen Lobb, Xin Wei, Benjamin J M Tremblay, Michael J Mansfield, Victoria C Y Lee, Pyung-Gang Lee, Jeffrey Coffin, Ana T Duggan and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 4 countries.

Harold P HodginsDepartment of Biology and the Waterloo Centre for Microbial Research, University of Waterloo, Waterloo, ON, Canada.
Pengsheng ChenDepartment of Urology, Boston Children's Hospital, Boston, MA, USA.
Briallen LobbDepartment of Biology and the Waterloo Centre for Microbial Research, University of Waterloo, Waterloo, ON, Canada.
Xin WeiDepartment of Biology and the Waterloo Centre for Microbial Research, University of Waterloo, Waterloo, ON, Canada.
Benjamin J M TremblayDepartment of Biology and the Waterloo Centre for Microbial Research, University of Waterloo, Waterloo, ON, Canada.ORCID http://orcid.org/0000-0002-7441-2951
Michael J MansfieldGenomics and Regulatory Systems Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.ORCID http://orcid.org/0000-0003-4717-4721
Victoria C Y LeeDepartment of Biology and the Waterloo Centre for Microbial Research, University of Waterloo, Waterloo, ON, Canada.
Pyung-Gang LeeDepartment of Urology, Boston Children's Hospital, Boston, MA, USA.
Jeffrey CoffinDepartment of Anthropology, University of Waterloo, Waterloo, ON, Canada.
Ana T DugganMcMaster Ancient DNA Centre, Department of Anthropology, McMaster University, Hamilton, ON, Canada.ORCID http://orcid.org/0000-0002-2582-2954
Alexis E DolphinDepartment of Anthropology, University of Waterloo, Waterloo, ON, Canada.
Gabriel RenaudDepartment of Health Technology, Section of Bioinformatics, Technical University of Denmark, Kongens Lyngby, Denmark. gabre@dtu.dk.ORCID http://orcid.org/0000-0002-0630-027X
Min DongDepartment of Urology, Boston Children's Hospital, Boston, MA, USA. Min.Dong@childrens.harvard.edu.ORCID http://orcid.org/0000-0002-1744-7293
Andrew C DoxeyDepartment of Biology and the Waterloo Centre for Microbial Research, University of Waterloo, Waterloo, ON, Canada. acdoxey@uwaterloo.ca.ORCID http://orcid.org/0000-0003-2015-099X
University of Waterloo · CABoston Children's Hospital · USMcMaster University · CAOkinawa Institute of Science and Technology Graduate University · JPTechnical University of Denmark · DK

Funding

Long-term effects of botulinum neurotoxins on neuronal viabilityR01NS080833 · NINDS · HARVARD MEDICAL SCHOOL · PI Min Dong · 2013 to 2026
$6.8M
Targeted Delivery of Therapeutics into Motor Neurons for Post-exposure Treatment of BotulismR01NS117626 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI DONG, MIN · 2021 to 2025
$3.3M
NINDS NIH HHS R01 NS080833NINDS NIH HHS R01 NS117626
6 · The paper itself

Abstract

The analysis of microbial genomes from human archaeological samples offers a historic snapshot of ancient pathogens and provides insights into the origins of modern infectious diseases. Here, we analyze metagenomic datasets from 38 human archaeological samples and identify bacterial genomic sequences related to modern-day Clostridium tetani, which produces the tetanus neurotoxin (TeNT) and causes the disease tetanus. These genomic assemblies had varying levels of completeness, and a subset of them displayed hallmarks of ancient DNA damage. Phylogenetic analyses revealed known C. tetani clades as well as potentially new Clostridium lineages closely related to C. tetani. The genomic assemblies encode 13 TeNT variants with unique substitution profiles, including a subgroup of TeNT variants found exclusively in ancient samples from South America. We experimentally tested a TeNT variant selected from an ancient Chilean mummy sample and found that it induced tetanus muscle paralysis in mice, with potency comparable to modern TeNT. Thus, our ancient DNA analysis identifies DNA from neurotoxigenic C. tetani in archaeological human samples, and a novel variant of TeNT that can cause disease in mammals.

Indexed as

DNA, AncientTetanusAnimalsChileClostridiumHumansMammalsMetalloendopeptidasesMiceNeurotoxinsPhylogenyTetanus ToxinDNA, AncientMetalloendopeptidasesNeurotoxinstetanospasminTetanus Toxin

Identifiers

PMID37673908
PMCPMC10482840
OpenAlexW4386475104

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.