Evidence map›Paper›PMID 37673872›Full record

ArticleNature communications2023

A fungal sesquiterpene biosynthesis gene cluster critical for mutualist-pathogen transition in Colletotrichum tofieldiae.

Kei Hiruma, Seishiro Aoki, Junya Takino, Takeshi Higa, Yuniar Devi Utami, Akito Shiina, Masanori Okamoto, Masami Nakamura, Nanami Kawamura, Yoshihiro Ohmori and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
14.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  5. Plant biotechnology (Tokyo, Japan) · 2025
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  6. Dynamic shifts in plant-microbe relationships.Plant biotechnology (Tokyo, Japan) · 2025
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  7. The Novel DiseaseJournal of fungi (Basel, Switzerland) · 2025
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  8. Article
  9. Review
  10. Review
  11. Article
  12. Frontiers in microbiology · 2025
    Article
  13. Article
  14. Limited Effectiveness ofFoods (Basel, Switzerland) · 2024
    Article
  15. Review
  16. Endophytic fungi are able to induce tolerance to salt stress in date palm seedlings (Phoenix dactylifera L.).Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 2 countries.

Kei HirumaDepartment of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo, 153-8902, Japan. hiruma@g.ecc.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0002-5487-5414
Seishiro AokiDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, 277-0882, Japan.ORCID http://orcid.org/0000-0001-8821-5716
Junya TakinoDepartment of Chemistry, Faculty of Science, Hokkaido University, Kita 10, Nishi 8, Kita-ku, Sapporo, 060-0810, Japan.
Takeshi HigaDepartment of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo, 153-8902, Japan.
Yuniar Devi UtamiDepartment of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo, 153-8902, Japan.ORCID http://orcid.org/0000-0002-3094-2299
Akito ShiinaDepartment of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo, 153-8902, Japan.
Masanori OkamotoCenter for Bioscience Research and Education, Utsunomiya University, 350 Mine-cho, Utsunomiya, Tochigi, 321-8505, Japan.ORCID http://orcid.org/0000-0002-1743-0408
Masami NakamuraDepartment of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo, 153-8902, Japan.
Nanami KawamuraDepartment of Science and Technology, Nara Institute of Science and Technology, Nara, 630-0192, Japan.ORCID http://orcid.org/0000-0001-7106-8190
Yoshihiro OhmoriGraduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.
Ryohei SugitaRadioisotope Research Center, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, 464-8602, Japan.ORCID http://orcid.org/0009-0000-0858-1821
Keitaro TanoiGraduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.ORCID http://orcid.org/0000-0001-7545-2771
Toyozo SatoGenetic Resources Center, National Agriculture and Food Research Organization, Ibaraki, 305-8602, Japan.
Hideaki OikawaInnovation Center of Marine Biotechnology and Pharmaceuticals, School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, Guangdong, 529020, China.ORCID http://orcid.org/0000-0002-6947-3397
Atsushi MinamiDepartment of Chemistry, Faculty of Science, Hokkaido University, Kita 10, Nishi 8, Kita-ku, Sapporo, 060-0810, Japan.ORCID http://orcid.org/0000-0002-4183-0268
Wataru IwasakiDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, 277-0882, Japan.ORCID http://orcid.org/0000-0002-9169-9245
Yusuke SaijoDepartment of Science and Technology, Nara Institute of Science and Technology, Nara, 630-0192, Japan.ORCID http://orcid.org/0000-0001-8985-9695
The University of Tokyo · JPHokkaido University · JPNara Institute of Science and Technology · JPNagoya University · JPNational Agriculture and Food Research Organization · JPUtsunomiya University · JPWuyi University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant-associated fungi show diverse lifestyles from pathogenic to mutualistic to the host; however, the principles and mechanisms through which they shift the lifestyles require elucidation. The root fungus Colletotrichum tofieldiae (Ct) promotes Arabidopsis thaliana growth under phosphate limiting conditions. Here we describe a Ct strain, designated Ct3, that severely inhibits plant growth. Ct3 pathogenesis occurs through activation of host abscisic acid pathways via a fungal secondary metabolism gene cluster related to the biosynthesis of sesquiterpene metabolites, including botrydial. Cluster activation during root infection suppresses host nutrient uptake-related genes and changes mineral contents, suggesting a role in manipulating host nutrition state. Conversely, disruption or environmental suppression of the cluster renders Ct3 beneficial for plant growth, in a manner dependent on host phosphate starvation response regulators. Our findings indicate that a fungal metabolism cluster provides a means by which infectious fungi modulate lifestyles along the parasitic-mutualistic continuum in fluctuating environments.

Indexed as

ArabidopsisGenes, FungalAbscisic AcidColletotrichumMultigene FamilySymbiosisAbscisic Acid

Identifiers

PMID37673872
PMCPMC10482981
OpenAlexW4386478288

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.