Evidence map›Paper›PMID 37673064›Full record

ArticleDevelopmental cell2023

A feedback loop between heterochromatin and the nucleopore complex controls germ-cell-to-oocyte transition during Drosophila oogenesis.

Kahini Sarkar, Noor M Kotb, Alex Lemus, Elliot T Martin, Alicia McCarthy, Justin Camacho, Ayman Iqbal, Alex M Valm, Morgan A Sammons, Prashanth Rangan

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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  5. Journal of developmental biology · 2025
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  7. A nuclear architecture screen inGenes & development · 2024
    Article
  8. A nuclear architecture screen inbioRxiv : the preprint server for biology · 2023
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Kahini SarkarDepartment of Biological Sciences and RNA Institute, University at Albany SUNY, Albany, NY 12222, USA.
Noor M KotbDepartment of Biological Sciences and RNA Institute, University at Albany SUNY, Albany, NY 12222, USA; Department of Biomedical Sciences, School of Public Health, University at Albany SUNY, Albany, NY 12222, USA.
Alex LemusDepartment of Biological Sciences and RNA Institute, University at Albany SUNY, Albany, NY 12222, USA.
Elliot T MartinDepartment of Biological Sciences and RNA Institute, University at Albany SUNY, Albany, NY 12222, USA.
Alicia McCarthyDepartment of Biological Sciences and RNA Institute, University at Albany SUNY, Albany, NY 12222, USA.
Justin CamachoDepartment of Biological Sciences and RNA Institute, University at Albany SUNY, Albany, NY 12222, USA.
Ayman IqbalDepartment of Biological Sciences and RNA Institute, University at Albany SUNY, Albany, NY 12222, USA.
Alex M ValmDepartment of Biological Sciences and RNA Institute, University at Albany SUNY, Albany, NY 12222, USA.
Morgan A SammonsDepartment of Biological Sciences and RNA Institute, University at Albany SUNY, Albany, NY 12222, USA.
Prashanth RanganDepartment of Biological Sciences and RNA Institute, University at Albany SUNY, Albany, NY 12222, USA. Electronic address: prashanth.rangan@mssm.edu.
University at Albany, State University of New York · US

Funding

Drosophila Transgenic RNAi Resource ProjectR01GM084947 · NIGMS · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2008 to 2019
$9.8M
Mechanisms of Regulation of Retinoic Acid HomeostasisR01GM111772 · NIGMS · UNIVERSITY OF WASHINGTON · PI ISOHERRANEN, NINA · 2014 to 2021
$3.0M
Regulation of stem cell differentiation during Drosophila oogenesisR01GM111779 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI RANGAN, PRASHANTH · 2014 to 2022
$2.7M
Oral microbial community structure and assembly: from molecule to microbiomeR01DE030927 · NIDCR · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI VALM, ALEX M · 2021 to 2025
$1.8M
Defining cis-regulatory networks controlling a core stress responseR35GM138120 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI SAMMONS, MORGAN ANDREW · 2020 to 2024
$1.8M
Role of RNA degradation in germline stem cell to oocyte transitionR01GM135628 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI RANGAN, PRASHANTH · 2020 to 2023
$1.3M
Cellular rejuvenation during oogenesisR56AG082906 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CAPELSON, MAYA, RANGAN, PRASHANTH · 2023 to 2023
$387k
NIA NIH HHS R56 AG082906NIDCR NIH HHS R01 DE030927NIGMS NIH HHS R01 GM084947NIGMS NIH HHS R01 GM111772NIGMS NIH HHS R01 GM111779NIGMS NIH HHS R01 GM135628NIGMS NIH HHS R35 GM138120
6 · The paper itself

Abstract

Germ cells differentiate into oocytes that launch the next generation upon fertilization. How the highly specialized oocyte acquires this distinct cell fate is poorly understood. During Drosophila oogenesis, H3K9me3 histone methyltransferase SETDB1 translocates from the cytoplasm to the nucleus of germ cells concurrently with oocyte specification. Here, we discovered that nuclear SETDB1 is required for silencing a cohort of differentiation-promoting genes by mediating their heterochromatinization. Intriguingly, SETDB1 is also required for upregulating 18 of the ∼30 nucleoporins (Nups) that compose the nucleopore complex (NPC), promoting NPC formation. NPCs anchor SETDB1-dependent heterochromatin at the nuclear periphery to maintain H3K9me3 and gene silencing in the egg chambers. Aberrant gene expression due to the loss of SETDB1 or Nups results in the loss of oocyte identity, cell death, and sterility. Thus, a feedback loop between heterochromatin and NPCs promotes transcriptional reprogramming at the onset of oocyte specification, which is critical for establishing oocyte identity.

Indexed as

DrosophilaDrosophila ProteinsAnimalsFeedbackGerm CellsHeterochromatinHumansOocytesOogenesisDrosophila ProteinsHeterochromatindifferentiationgerm cellsgerm lineheterochromatinNPCnucleopore complexoocyteSETDB1

Identifiers

PMID37673064
PMCPMC11301765
OpenAlexW4386443717

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.