Evidence map›Paper›PMID 37673063›Full record

ArticleDevelopmental cell2023

Mitochondrial leak metabolism induces the Spemann-Mangold Organizer via Hif-1α in Xenopus.

Alexandra MacColl Garfinkel, Nelli Mnatsakanyan, Jeet H Patel, Andrea E Wills, Amy Shteyman, Peter J S Smith, Kambiz N Alavian, Elizabeth Ann Jonas, Mustafa K Khokha

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
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  8. Review
  9. Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Alexandra MacColl GarfinkelPediatric Genomics Discovery Program, Department of Pediatrics and Genetics, Yale University School of Medicine, New Haven, CT 06510, USA; Section of Endocrinology, Department of Internal Medicine, Yale University, New Haven, CT 06510, USA.
Nelli MnatsakanyanDepartment of Cellular and Molecular Physiology, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Jeet H PatelDepartment of Biochemistry, University of Washington School of Medicine, Seattle, WA 98195, USA; Program in Molecular and Cellular Biology, University of Washington School of Medicine, Seattle, WA 98195, USA.
Andrea E WillsDepartment of Biochemistry, University of Washington School of Medicine, Seattle, WA 98195, USA; Institute for Stem Cell and Regenerative Medicine, University of Washington School of Medicine, Seattle, WA 98195, USA.
Amy ShteymanSection of Endocrinology, Department of Internal Medicine, Yale University, New Haven, CT 06510, USA.
Peter J S SmithInstitute for Life Sciences, University of Southampton, Southampton SO17 1BJ, UK.
Kambiz N AlavianDepartment of Medicine, Imperial College, London SW7 5NH, UK.
Elizabeth Ann JonasSection of Endocrinology, Department of Internal Medicine, Yale University, New Haven, CT 06510, USA. Electronic address: elizabeth.jonas@yale.edu.
Mustafa K KhokhaPediatric Genomics Discovery Program, Department of Pediatrics and Genetics, Yale University School of Medicine, New Haven, CT 06510, USA. Electronic address: mustafa.khokha@yale.edu.
Yale University · USUniversity of Washington · USImperial College London · GBPennsylvania State University · USUniversity of Southampton · GB

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
DIABETES MELLITUS &DISORDERS OF METABOLISMT32DK007058 · NIDDK · YALE UNIVERSITY · PI SONIA CAPRIO, Kevan C Herold · 1986 to 2026
$9.6M
Mitochondrial Ion Channels in Hypoxic NeuronsR37NS045876 · NINDS · YALE UNIVERSITY · PI Elizabeth Ann Jonas · 2014 to 2026
$4.9M
Mitochondrial control of protein translation in Fragile XR01NS112706 · NINDS · YALE UNIVERSITY · PI Elizabeth Ann Jonas, Pawel Licznerski · 2019 to 2026
$3.6M
Mitochondrial ion channels in hypoxic neuronsR01NS045876 · NINDS · YALE UNIVERSITY · PI JONAS, ELIZABETH ANN · 2004 to 2013
$3.3M
Transcriptional regulatory mechanisms of vertebrate regenerationR01NS099124 · NINDS · UNIVERSITY OF WASHINGTON · PI Andrea Elizabeth Wills · 2017 to 2026
$3.3M
A system approach to the analysis of Heterotaxy Candidate GenesR01HD102186 · NICHD · YALE UNIVERSITY · PI KHOKHA, MUSTAFA K · 2020 to 2024
$3.1M
Potassium channels, membrane potential, and CHDR01HL149746 · NHLBI · YALE UNIVERSITY · PI KHOKHA, MUSTAFA K, ZENISEK, DAVID PAUL · 2020 to 2023
$2.3M
Structural and functional characterization of ATP synthase c-subunit leak channel and its role in AD pathogenesisRF1AG072484 · NIA · YALE UNIVERSITY · PI MNATSAKANYAN, NELLI · 2021 to 2021
$2.0M
Regional specific metabolism regulates specification of the Spemann OrganizerR01HD114493 · NICHD · YALE UNIVERSITY · PI Elizabeth Ann Jonas, Mustafa K Khokha · 2024 to 2026
$1.8M
Decoding the metabolic requirements for vertebrate appendage regenerationR01GM148490 · NIGMS · UNIVERSITY OF WASHINGTON · PI Andrea Elizabeth Wills · 2023 to 2026
$1.7M
NCATS NIH HHS UL1 TR001863NHLBI NIH HHS F31 HL140823NHLBI NIH HHS R01 HL149746NIA NIH HHS K01 AG054734NIA NIH HHS R01 AG072484NIA NIH HHS RF1 AG072484NICHD NIH HHS R01 HD102186NICHD NIH HHS R01 HD114493NIDCD NIH HHS R21 DC019948NIDDK NIH HHS T32 DK007058NIGMS NIH HHS R01 GM148490NIGMS NIH HHS T32 GM007270NINDS NIH HHS R01 NS045876NINDS NIH HHS R01 NS099124NINDS NIH HHS R01 NS112706NINDS NIH HHS R37 NS045876
6 · The paper itself

Abstract

An instructive role for metabolism in embryonic patterning is emerging, although a role for mitochondria is poorly defined. We demonstrate that mitochondrial oxidative metabolism establishes the embryonic patterning center, the Spemann-Mangold Organizer, via hypoxia-inducible factor 1α (Hif-1α) in Xenopus. Hypoxia or decoupling ATP production from oxygen consumption expands the Organizer by activating Hif-1α. In addition, oxygen consumption is 20% higher in the Organizer than in the ventral mesoderm, indicating an elevation in mitochondrial respiration. To reconcile increased mitochondrial respiration with activation of Hif-1α, we discovered that the "free" c-subunit ring of the F

Indexed as

Hypoxia-Inducible Factor 1, alpha SubunitMitochondriaOrganizers, EmbryonicAdenosine TriphosphateAnimalsHypoxiaXenopus laevisAdenosine TriphosphateHypoxia-Inducible Factor 1, alpha SubunitF(1)F(o) ATP synthasefree c-subunitHif-1αhypoxiaLRPPRCmetabolismmitochondriaSpemann-Mangold OrganizerWnt/β-catenin signalingXenopus

Identifiers

PMID37673063
PMCPMC10840693
OpenAlexW4386444658

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.