Evidence map›Paper›PMID 37672576›Full record

ArticleScience advances2023

HIV-1 Vpr induces ciTRAN to prevent transcriptional repression of the provirus.

Vipin Bhardwaj, Aman Singh, Aditi Choudhary, Rishikesh Dalavi, Lalchhanhima Ralte, Richard L Chawngthu, Nachimuthu Senthil Kumar, Nagarjun Vijay, Ajit Chande

Abstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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  20. Virus-Encoded Circular RNAs: Role and Significance in Viral Infections.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Vipin BhardwajMolecular Virology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, India.ORCID 0000-0003-2076-6794
Aman SinghMolecular Virology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, India.ORCID 0000-0001-8946-4247
Aditi ChoudharyMolecular Virology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, India.
Rishikesh DalaviMolecular Virology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, India.ORCID 0000-0001-6897-4424
Lalchhanhima RalteSynod Hospital Durtlang, Aizawl, Mizoram, India.
Richard L ChawngthuMizoram State AIDS Control Society (MSACS), Aizawl, Mizoram, India.
Nachimuthu Senthil KumarDepartment of Biotechnology, Mizoram University, Aizawl, Mizoram, India.ORCID 0000-0002-0192-2133
Nagarjun VijayComputational and Evolutionary Genomics Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, India.ORCID 0000-0002-8703-6991
Ajit ChandeMolecular Virology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, India.ORCID 0000-0003-2210-5180

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The functional consequences of circular RNA (circRNA) expression on HIV-1 replication are largely unknown. Using a customized protocol involving direct RNA nanopore sequencing, here, we captured circRNAs from HIV-1-infected T cells and identified ciTRAN, a circRNA that modulates HIV-1 transcription. We found that HIV-1 infection induces ciTRAN expression in a Vpr-dependent manner and that ciTRAN interacts with SRSF1, a protein known to repress HIV-1 transcription. Our results suggest that HIV-1 hijacks ciTRAN to exclude serine/arginine-rich splicing factor 1 (SRSF1) from the viral transcriptional complex, thereby promoting efficient viral transcription. In addition, we demonstrate that an SRSF1-inspired mimic can inhibit viral transcription regardless of ciTRAN induction. The hijacking of a host circRNA thus represents a previously unknown facet of primate lentiviruses in overcoming transmission bottlenecks.

Indexed as

HIV-1NanoporesAnimalsGene ExpressionProvirusesRNA, CircularRNA, Circular

Identifiers

PMID37672576
PMCPMC10482341

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.