Evidence map›Paper›PMID 37672426›Full record

ArticleMemorias do Instituto Oswaldo Cruz2023

Microbiome and virome on indoor surfaces of an Antarctic research ship.

Tatiana Prado, Maithê Gaspar Pontes Magalhães, Daniel Andrade Moreira, Martha Lima Brandão, Tulio Machado Fumian, Fernando Cesar Ferreira, Marcia Chame, Luciana Leomil, Wim Maurits Sylvain Degrave, José Paulo Gagliardi Leite and 1 more

Abstract read
In one paragraph

Article in Memorias do Instituto Oswaldo Cruz, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Tatiana PradoFundação Oswaldo Cruz-Fiocruz, Laboratório de Vírus Respiratórios, Exantemáticos, Enterovírus e Emergências Virais, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0000-0002-8736-6683
Maithê Gaspar Pontes MagalhãesFundação Oswaldo Cruz-Fiocruz, Laboratório de Genômica Aplicada e BioInovações, Rio de Janeiro, RJ, Brasil.
Daniel Andrade MoreiraFundação Oswaldo Cruz-Fiocruz, Laboratório de Genômica Aplicada e BioInovações, Rio de Janeiro, RJ, Brasil.
Martha Lima BrandãoFundação Oswaldo Cruz-Fiocruz, Projeto FioAntar/VPPIS, Rio de Janeiro, RJ, Brasil.
Tulio Machado FumianFundação Oswaldo Cruz-Fiocruz, Laboratório de Virologia Comparada e Ambiental, Rio de Janeiro, RJ, Brasil.
Fernando Cesar FerreiraFundação Oswaldo Cruz-Fiocruz, Laboratório de Virologia Comparada e Ambiental, Rio de Janeiro, RJ, Brasil.
Marcia ChameFundação Oswaldo Cruz-Fiocruz, Plataforma Institucional para Biodiversidade e Saúde Animal, Rio de Janeiro, RJ, Brasil.
Luciana LeomilServiço Nacional de Aprendizagem Industrial, Centro Tecnológico para Indústria Química e Têxtil, Biotecnologia, Parque Tecnológico da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brasil.
Wim Maurits Sylvain DegraveFundação Oswaldo Cruz-Fiocruz, Laboratório de Genômica Aplicada e BioInovações, Rio de Janeiro, RJ, Brasil.
José Paulo Gagliardi LeiteFundação Oswaldo Cruz-Fiocruz, Laboratório de Virologia Comparada e Ambiental, Rio de Janeiro, RJ, Brasil.
Marize Pereira MiagostovichFundação Oswaldo Cruz-Fiocruz, Laboratório de Virologia Comparada e Ambiental, Rio de Janeiro, RJ, Brasil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFew studies have focused on microbial diversity in indoor environments of ships, as well as the role of the microbiome and its ecological interconnections. In this study, we investigated the microbiome and virome present on the internal surfaces of a polar ship in different stages (beginning, during, and at the end) of the Brazilian Antarctic expedition in order to evaluate abundance of microorganisms in different periods. OBJECTIVES AND

methodsWe used shotgun metagenomic analysis on pooled samples from sampling surfaces in the ship's interior to track the microbial diversity.

findingsConsidering the total fraction of the microbiome, the relative abundance of bacteria, eukaryotes, viruses, and archaea was 83.7%, 16.2%, 0.04%, and 0.002%, respectively. Proteobacteria was the most abundant bacterial phyla, followed by Firmicutes, Actinobacteria, and Bacteroidetes. Concerning the virome, the greatest richness of viral species was identified during the middle of the trip, including ten viral families after de novo assembly: Autographiviridae, Chrysoviridae, Genomoviridae, Herelleviridae, Myoviridae, Partitiviridae, Podoviridae, Potyviridae, Siphoviridae, and Virgaviridae. MAIN

conclusionsThis study contributed to the knowledge of microbial diversity in naval transportation facilities, and variations in the abundance of microorganisms probably occurred due to factors such as the number of passengers and activities on the ship.

Indexed as

MicrobiotaViromeAntarctic RegionsArchaeaHumansShips

Identifiers

PMID37672426
PMCPMC10481937

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.