Evidence map›Paper›PMID 37671664›Full record

ArticleMolecular biology and evolution2023

Relaxation of Natural Selection in the Evolution of the Giant Lungfish Genomes.

Silvia Fuselli, Samuele Greco, Roberto Biello, Sergio Palmitessa, Marta Lago, Corrado Meneghetti, Carmel McDougall, Emiliano Trucchi, Omar Rota Stabelli, Assunta Maria Biscotti and 7 more

Open access · goldAbstract read
In one paragraph

Article in Molecular biology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Common misconceptions of speciation.Evolutionary journal of the Linnean Society · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 2 countries.

Silvia FuselliDepartment of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
Samuele GrecoDepartment of Life Sciences, University of Trieste, Trieste, Italy.
Roberto BielloDepartment of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
Sergio PalmitessaDepartment of Life Sciences, University of Trieste, Trieste, Italy.
Marta LagoDepartment of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
Corrado MeneghettiDepartment of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
Carmel McDougallAustralian Rivers Institute, Griffith University, Brisbane, Queensland, Australia.
Emiliano TrucchiDepartment of Life and Environmental Sciences, Marche Polytechnic University, Ancona, Italy.
Omar Rota StabelliResearch and Innovation Centre, Fondazione Edmund Mach, 38010 San Michele all'Adige, Italy.
Assunta Maria BiscottiDepartment of Life and Environmental Sciences, Marche Polytechnic University, Ancona, Italy.
Daniel J SchmidtAustralian Rivers Institute, Griffith University, Brisbane, Queensland, Australia.
David T RobertsSeqwater, Ipswich, 4305 Queensland, Australia.
Thomas EspinozaSeqwater, Ipswich, 4305 Queensland, Australia.
Jane Margaret HughesAustralian Rivers Institute, Griffith University, Brisbane, Queensland, Australia.
Lino OmettoDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.ORCID 0000-0002-2679-625X
Marco GerdolDepartment of Life Sciences, University of Trieste, Trieste, Italy.
Giorgio BertorelleDepartment of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
University of Ferrara · ITGriffith University · AUUniversity of Trieste · ITMarche Polytechnic University · ITSeqwater · AUFondazione Edmund Mach · ITUniversity of Pavia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nonadaptive hypotheses on the evolution of eukaryotic genome size predict an expansion when the process of purifying selection becomes weak. Accordingly, species with huge genomes, such as lungfish, are expected to show a genome-wide relaxation signature of selection compared with other organisms. However, few studies have empirically tested this prediction using genomic data in a comparative framework. Here, we show that 1) the newly assembled transcriptome of the Australian lungfish, Neoceratodus forsteri, is characterized by an excess of pervasive transcription, or transcriptional leakage, possibly due to suboptimal transcriptional control, and 2) a significant relaxation signature in coding genes in lungfish species compared with other vertebrates. Based on these observations, we propose that the largest known animal genomes evolved in a nearly neutral scenario where genome expansion is less efficiently constrained.

Indexed as

FishesGenomicsAnimalsAustraliaGenome SizeSelection, GeneticAustralian lungfish (Neoceratodus forsteri)genome size evolutionlungfishpervasive transcriptionrelaxation of natural selection

Identifiers

PMID37671664
PMCPMC10503785
OpenAlexW4386467025

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.