Evidence map›Paper›PMID 37671026›Full record

ArticleCell reports methods2023

Image-based and machine learning-guided multiplexed serology test for SARS-CoV-2.

Vilja Pietiäinen, Minttu Polso, Ede Migh, Christian Guckelsberger, Maria Harmati, Akos Diosdi, Laura Turunen, Antti Hassinen, Swapnil Potdar, Annika Koponen and 22 more

Abstract read
In one paragraph

Article in Cell reports methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors.

Vilja PietiäinenInstitute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki, Helsinki, Finland.
Minttu PolsoInstitute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki, Helsinki, Finland.
Ede MighLaboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre, Szeged, Hungary.
Christian GuckelsbergerInstitute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki, Helsinki, Finland.
Maria HarmatiLaboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre, Szeged, Hungary.
Akos DiosdiLaboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre, Szeged, Hungary.
Laura TurunenInstitute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki, Helsinki, Finland.
Antti HassinenInstitute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki, Helsinki, Finland.
Swapnil PotdarInstitute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki, Helsinki, Finland.
Annika KoponenMinerva Foundation Institute for Medical Research, Helsinki, Finland.
Edina Gyukity SebestyenLaboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre, Szeged, Hungary.
Ferenc KovacsLaboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre, Szeged, Hungary.
Andras KristonLaboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre, Szeged, Hungary.
Reka HollandiLaboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre, Szeged, Hungary.
Katalin BurianDepartment of Medical Microbiology, Faculty of Medicine, University of Szeged, Szeged, Hungary.
Gabriella TerhesDepartment of Medical Microbiology, Faculty of Medicine, University of Szeged, Szeged, Hungary.
Adam Visnyovszki1 Department of Internal Medicine, Faculty of Medicine, University of Szeged, Szeged, Hungary.
Eszter FodorDepartment of Sports Physiology, Institute of Sports and Health Sciences, University of Physical Education, Budapest, Hungary.
Zsombor LaczaDepartment of Sports Physiology, Institute of Sports and Health Sciences, University of Physical Education, Budapest, Hungary.
Anu KanteleMeilahti Infectious Diseases and Vaccine Research Center (MeiVac), University of Helsinki and Helsinki University Hospital, Helsinki, Finland.
Pekka KolehmainenInstitute of Biomedicine, University of Turku, Turku, Finland.
Laura KakkolaInstitute of Biomedicine, University of Turku, Turku, Finland.
Tomas StrandinDepartment of Virology, Medicum, University of Helsinki, Helsinki, Finland.
Lev LevanovDepartment of Virology, Medicum, University of Helsinki, Helsinki, Finland.
Olli KallioniemiInstitute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki, Helsinki, Finland.
Lajos KemenyHCEMM-USZ Skin Research Group, Department of Dermatology and Allergology, University of Szeged, Szeged, Hungary.
Ilkka JulkunenInstitute of Biomedicine, University of Turku, Turku, Finland.
Olli VapalahtiDepartment of Virology, Medicum, University of Helsinki, Helsinki, Finland.
Krisztina BuzasLaboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre, Szeged, Hungary.
Lassi PaavolainenInstitute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki, Helsinki, Finland.
Peter HorvathInstitute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki, Helsinki, Finland.
Jussi HepojokiDepartment of Virology, Medicum, University of Helsinki, Helsinki, Finland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a miniaturized immunofluorescence assay (mini-IFA) for measuring antibody response in patient blood samples. The method utilizes machine learning-guided image analysis and enables simultaneous measurement of immunoglobulin M (IgM), IgA, and IgG responses against different viral antigens in an automated and high-throughput manner. The assay relies on antigens expressed through transfection, enabling use at a low biosafety level and fast adaptation to emerging pathogens. Using severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) as the model pathogen, we demonstrate that this method allows differentiation between vaccine-induced and infection-induced antibody responses. Additionally, we established a dedicated web page for quantitative visualization of sample-specific results and their distribution, comparing them with controls and other samples. Our results provide a proof of concept for the approach, demonstrating fast and accurate measurement of antibody responses in a research setup with prospects for clinical diagnostics.

Indexed as

COVID-19SARS-CoV-2AcclimatizationCOVID-19 TestingHumansMachine Learningantibody responsecell-based assayCOVID-19high-content imagingimmunofluorescence assaymachine learningmini-IFASARS-CoV-2serologyvirus

Identifiers

PMID37671026
PMCPMC10475844

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.