Evidence map›Paper›PMID 37669948›Full record

ArticleNature communications2023

Programmable RNA detection with CRISPR-Cas12a.

Santosh R Rananaware, Emma K Vesco, Grace M Shoemaker, Swapnil S Anekar, Luke Samuel W Sandoval, Katelyn S Meister, Nicolas C Macaluso, Long T Nguyen, Piyush K Jain

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
31.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 207 citations in OpenAlex.

  1. Architecture of a DNA-guided Cas12a.Nature structural & molecular biology · 2026
    Article
  2. Article
  3. Attomolar Detection of HIV-1 With Label-Free RCA-rCRISPR on Smartphone.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Molecular mechanisms and biotechnology applications of CRISPR-Cas12a.Nature reviews. Molecular cell biology · 2026
    Review
  5. Article
  6. Machine Learning for CRISPR-Based Diagnostics.International journal of molecular sciences · 2026
    Review
  7. Review
  8. Article
  9. SDS-CRISPR for Single-Nucleotide Variant Detection.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Santosh R RananawareDepartment of Chemical Engineering, University of Florida, Gainesville, FL, USA.
Emma K VescoDepartment of Chemical Engineering, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0002-1156-8377
Grace M ShoemakerDepartment of Chemical Engineering, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0001-7779-3596
Swapnil S AnekarDepartment of Chemical Engineering, University of Florida, Gainesville, FL, USA.
Luke Samuel W SandovalDepartment of Biology, CLAS, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0001-9808-3083
Katelyn S MeisterDepartment of Chemical Engineering, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0002-4642-1949
Nicolas C MacalusoDepartment of Chemical Engineering, University of Florida, Gainesville, FL, USA.
Long T NguyenDepartment of Chemical Engineering, University of Florida, Gainesville, FL, USA.
Piyush K JainDepartment of Chemical Engineering, University of Florida, Gainesville, FL, USA. jainp@ufl.edu.ORCID http://orcid.org/0000-0001-7153-442X
University of Florida · USBaylor College of Medicine · USUniversity of Florida Health · US

Funding

Discovery and engineering of CRISPR/Cas systemsR35GM147788 · NIGMS · UNIVERSITY OF FLORIDA · PI Piyush K Jain · 2022 to 2026
$1.8M
Rapid detection of Hepatitis C virus using CRISPR/CasR21AI156321 · NIAID · UNIVERSITY OF FLORIDA · PI JAIN, PIYUSH K · 2021 to 2022
$419k
Rapid point-of-care detection of Hepatitis C viral RNA using multiplexed CRISPR/Cas platformsR21AI168795 · NIAID · UNIVERSITY OF FLORIDA · PI JAIN, PIYUSH K · 2022 to 2023
$419k
NIAID NIH HHS R21 AI156321NIAID NIH HHS R21 AI168795NIGMS NIH HHS R35 GM147788
6 · The paper itself

Abstract

Cas12a, a CRISPR-associated protein complex, has an inherent ability to cleave DNA substrates and is utilized in diagnostic tools to identify DNA molecules. We demonstrate that multiple orthologs of Cas12a activate trans-cleavage in the presence of split activators. Specifically, the PAM-distal region of the crRNA recognizes RNA targets provided that the PAM-proximal seed region has a DNA target. Our method, Split Activator for Highly Accessible RNA Analysis (SAHARA), detects picomolar concentrations of RNA without sample amplification, reverse-transcription, or strand-displacement by simply supplying a short DNA sequence complementary to the seed region. Beyond RNA detection, SAHARA outperforms wild-type CRISPR-Cas12a in specificity towards point-mutations and can detect multiple RNA and DNA targets in pooled crRNA/Cas12a arrays via distinct PAM-proximal seed DNAs. In conclusion, SAHARA is a simple, yet powerful nucleic acid detection platform based on Cas12a that can be applied in a multiplexed fashion and potentially be expanded to other CRISPR-Cas enzymes.

Indexed as

CRISPR-Cas SystemsRNAPoint MutationRecombination, GeneticRNA, Guide, CRISPR-Cas SystemsRNARNA, Guide, CRISPR-Cas Systems

Identifiers

PMID37669948
PMCPMC10480431
OpenAlexW4386440508

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.