Evidence map›Paper›PMID 37669392›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Whole-genome detection using multivalent DNA-coated colloids.

Peicheng Xu, Ting Cao, Qihui Fan, Xiaochen Wang, Fangfu Ye, Erika Eiser

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Entropy-Driven Physical Amplification in Multivalent Biosensing.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
  3. Article
  4. Hopping and crawling DNA-coated colloids.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Peicheng Xu *Beijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China.
Ting Cao *Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325001, China.ORCID 0000-0002-0596-578X
Qihui FanBeijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China.ORCID 0000-0002-6408-8369
Xiaochen WangWenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325001, China.
Fangfu YeBeijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China.ORCID 0000-0003-1279-105X
Erika EiserPorelab, Department of Physics, Norwegian University of Science and Technology, Trondheim NO-7491, Norway.ORCID 0000-0003-2881-8157

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To minimize the incorrect use of antibiotics, there is a great need for rapid and inexpensive tests to identify the pathogens that cause an infection. The gold standard of pathogen identification is based on the recognition of DNA sequences that are unique for a given pathogen. Here, we propose and test a strategy to develop simple, fast, and highly sensitive biosensors that make use of multivalency. Our approach uses DNA-functionalized polystyrene colloids that distinguish pathogens on the basis of the frequency of selected short DNA sequences in their genome. Importantly, our method uses entire genomes and does not require nucleic acid amplification. Polystyrene colloids grafted with specially designed surface DNA probes can bind cooperatively to frequently repeated sequences along the entire genome of the target bacteria, resulting in the formation of large and easily detectable colloidal aggregates. Our detection strategy allows "mix and read" detection of the target analyte; it is robust and highly sensitive over a wide concentration range covering, in the case of our test target genome

Indexed as

DNAPolystyrenesAnti-Bacterial AgentsColloidsEnvironmental MonitoringEscherichia coliAnti-Bacterial AgentsColloidsDNAPolystyrenescolloidal probesDNA detectionfull genome detectionmultivalencysuperselectivity

Identifiers

PMID37669392
PMCPMC10500262

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.