Evidence map›Paper›PMID 37667232›Full record

ArticleGenome biology2023

Pervasive under-dominance in gene expression underlying emergent growth trajectories in Arabidopsis thaliana hybrids.

Wei Yuan, Fiona Beitel, Thanvi Srikant, Ilja Bezrukov, Sabine Schäfer, Robin Kraft, Detlef Weigel

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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  3. High- or Low-Yielding FInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Wei YuanDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, 72076, Tübingen, Germany.
Fiona BeitelDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, 72076, Tübingen, Germany.
Thanvi SrikantDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, 72076, Tübingen, Germany.
Ilja BezrukovDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, 72076, Tübingen, Germany.
Sabine SchäferDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, 72076, Tübingen, Germany.
Robin KraftDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, 72076, Tübingen, Germany.
Detlef WeigelDepartment of Molecular Biology, Max Planck Institute for Biology Tübingen, 72076, Tübingen, Germany. weigel@tue.mpg.de.ORCID http://orcid.org/0000-0002-2114-7963
Max Planck Institute for Biology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundComplex traits, such as growth and fitness, are typically controlled by a very large number of variants, which can interact in both additive and non-additive fashion. In an attempt to gauge the relative importance of both types of genetic interactions, we turn to hybrids, which provide a facile means for creating many novel allele combinations.

resultsWe focus on the interaction between alleles of the same locus, i.e., dominance, and perform a transcriptomic study involving 141 random crosses between different accessions of the plant model species Arabidopsis thaliana. Additivity is rare, consistently observed for only about 300 genes enriched for roles in stress response and cell death. Regulatory rare-allele burden affects the expression level of these genes but does not correlate with F

conclusionsOur study underscores under-dominance as the predominant gene action associated with emergence of rosette growth trajectories in the A. thaliana hybrid model. Our work lays the foundation for understanding molecular mechanisms and evolutionary forces that lead to dominance complementation of rare regulatory alleles.

Indexed as

ArabidopsisAllelesBiological EvolutionEpistasis, GeneticQuantitative Trait, HeritableTranscriptome

Identifiers

PMID37667232
PMCPMC10478501
OpenAlexW4386422681

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.