Evidence map›Paper›PMID 37666878›Full record

ArticleScientific reports2023

Developmental validation of Applied Biosystems YFiler Platinum Casework PCR Amplification Kit.

Sumin Lee, Peterjon K McAnany, Chien Wei Chang, Wilma Norona, Marc L Short, Julio J Mulero, Chang Zhong

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Sumin LeeThermo Fisher Scientific Inc., 6065 Sunol Blvd, Pleasanton, CA, 94566, USA.
Peterjon K McAnanyThermo Fisher Scientific Inc., 6065 Sunol Blvd, Pleasanton, CA, 94566, USA.
Chien Wei ChangThermo Fisher Scientific Inc., 6065 Sunol Blvd, Pleasanton, CA, 94566, USA.
Wilma NoronaThermo Fisher Scientific Inc., 6065 Sunol Blvd, Pleasanton, CA, 94566, USA.
Marc L ShortThermo Fisher Scientific Inc., 6065 Sunol Blvd, Pleasanton, CA, 94566, USA.
Julio J MuleroThermo Fisher Scientific Inc., 6065 Sunol Blvd, Pleasanton, CA, 94566, USA.
Chang ZhongThermo Fisher Scientific Inc., 6065 Sunol Blvd, Pleasanton, CA, 94566, USA. chang.zhong@thermofisher.com.
Thermo Fisher Scientific (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The YFiler Platinum Casework PCR Amplification Kit is a 6-dye multiplex assay that simultaneously amplifies a set of 38 male-specific, Y-chromosome Short Tandem Repeat (YSTR) markers (DYS576, DYS389I, DYS635, DYS389II, DYS627, DYS549, DYS593, DYS645, DYS460, DYS458, DYS19, YGATAH4, DYS448, DYS391, DYS557, DYS522, DYS456, DYS390, DYS438, DYS392, DYS518, DYS444, DYS533, DYS570, DYS437, DYS385, DYS449, DYS643, DYS596, DYS393, DYS439, DYS481, DYF387S1, DYS527, DYS447), three insertion/deletion polymorphic markers (Yindels: rs771783753, rs759551978, rs199815934), and an internal quality control (IQC) system. When compared to the YFiler Platinum PCR Amplification kit for database samples, YFiler Platinum Casework kit was developed to include an improved Primer Mix incorporating a brighter TED dye, an updated internal quality control system, better resolution of large DNA fragments in Applied Biosystems POP-4 Polymer, and reduced female DNA cross-reactivity. Here, we report the results of the developmental validation study which followed the Scientific Working Group on DNA Analysis Methods (SWGDAM) guidelines and includes data for PCR-based studies, sensitivity, species specificity, stability, precision, reproducibility and repeatability, population concordance, stutter, DNA mixtures, and performance on mock casework samples. The results validate the multiplex design as well as demonstrate the kit's robustness, reliability, and suitability as an assay for human identification with casework DNA samples.

Indexed as

PlatinumReceptor Protein-Tyrosine KinasesFemaleHumansMalePhosphorylationPolymerase Chain ReactionReproducibility of ResultsPlatinumReceptor Protein-Tyrosine Kinases

Identifiers

PMID37666878
PMCPMC10477233
OpenAlexW4386416885

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.