Evidence map›Paper›PMID 37666846›Full record

ArticleScientific reports2023

Immunological characterization and diagnostic models of RNA N6-methyladenosine regulators in Alzheimer's disease.

Yuan Hui, Qi Ma, Xue-Rui Zhou, Huan Wang, Jian-Hua Dong, Li-Na Gao, Tian Zhang, Yan-Yi Li, Ting Gong

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Mitochondrial One-Carbon Metabolism and Alzheimer's Disease.International journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yuan Hui *School of Integrative Medicine, Gansu University of Traditional Chinese Medicine, Lanzhou, China.
Qi Ma *School of Integrative Medicine, Gansu University of Traditional Chinese Medicine, Lanzhou, China.
Xue-Rui ZhouSchool of Integrative Medicine, Gansu University of Traditional Chinese Medicine, Lanzhou, China.
Huan WangSchool of Integrative Medicine, Gansu University of Traditional Chinese Medicine, Lanzhou, China.
Jian-Hua DongSchool of Integrative Medicine, Gansu University of Traditional Chinese Medicine, Lanzhou, China.
Li-Na GaoSchool of Integrative Medicine, Gansu University of Traditional Chinese Medicine, Lanzhou, China.
Tian ZhangSchool of Integrative Medicine, Gansu University of Traditional Chinese Medicine, Lanzhou, China.
Yan-Yi LiDepartment of Encephalopathy II, Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China.
Ting GongDepartment of Encephalopathy II, Gansu Provincial Hospital of Traditional Chinese Medicine, Lanzhou, 730050, China. 963662105@qq.com.
Gansu University of Traditional Chinese Medicine · CNGansu Provincial Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alzheimer's disease (AD) is the most prevalent form of dementia, and it displays both clinical and molecular variability. RNA N6-methyladenosine (m6A) regulators are involved in a wide range of essential cellular processes. In this study, we aimed to identify molecular signatures associated with m6A in Alzheimer's disease and use those signatures to develop a predictive model. We examined the expression patterns of m6A regulators and immune features in Alzheimer's disease using the GSE33000 dataset. We examined the immune cell infiltration and molecular groups based on m6A-related genes in 310 Alzheimer's disease samples. The WGCNA algorithm was utilized to determine differently expressed genes within each cluster. After evaluating the strengths and weaknesses of the random forest model, the support vector machine model, the generalized linear model, and eXtreme Gradient Boosting, the best machine model was selected. Methods such as nomograms, calibration curves, judgment curve analysis, and the use of independent data sets were used to verify the accuracy of the predictions made. Alzheimer's disease and non-disease Alzheimer's groups were compared to identify dysregulated m6A-related genes and activated immune responses. In Alzheimer's disease, two molecular clusters linked to m6A were identified. Immune infiltration analysis indicated substantial variation in protection between groups. Cluster 1 included processes like the Toll-like receptor signaling cascade, positive regulation of chromatin binding, and numerous malignancies; cluster 2 included processes like the cell cycle, mRNA transport, and ubiquitin-mediated proteolysis. With a lower residual and root mean square error and a larger area under the curve (AUC = 0.951), the Random forest machine model showed the greatest discriminative performance. The resulting random forest model was based on five genes, and it performed well (AUC = 0.894) on external validation datasets. Accuracy in predicting Alzheimer's disease subgroups was also shown by analyses of nomograms, calibration curves, and decision curves. In this research, we methodically outlined the tangled web of connections between m6A and AD and created a promising prediction model for gauging the correlation between m6A subtype risk and AD pathology.

Indexed as

Alzheimer DiseaseRNAAdenosineHumansRNA TransportAdenosineRNA

Identifiers

PMID37666846
PMCPMC10477294
OpenAlexW4386424104

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.