Evidence map›Paper›PMID 37666447›Full record

ArticleFungal genetics and biology : FG & B2023

The KdmB-EcoA-RpdA-SntB (KERS) chromatin regulatory complex controls development, secondary metabolism and pathogenicity in Aspergillus flavus.

Betim Karahoda, Brandon T Pfannenstiel, Özlem Sarikaya-Bayram, Zhiqiang Dong, Koon Ho Wong, Alastair B Fleming, Nancy P Keller, Özgür Bayram

Open access · hybridAbstract read
In one paragraph

Article in Fungal genetics and biology : FG & B, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
6.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Epigenetic Regulation of Fungal Secondary Metabolism.Journal of fungi (Basel, Switzerland) · 2024
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Betim KarahodaBiology Department, Maynooth University, Maynooth, Co. Kildare, Ireland.
Brandon T PfannenstielDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, USA.
Özlem Sarikaya-BayramBiology Department, Maynooth University, Maynooth, Co. Kildare, Ireland.
Zhiqiang DongFaculty of Health Sciences, University of Macau, Macau.
Koon Ho WongFaculty of Health Sciences, University of Macau, Macau; Institute of Translational Medicine, University of Macau, Macau; Ministry of Education Frontiers Science Center for Precision Oncology, University of Macau, Macau.
Alastair B FlemingDepartment of Microbiology, Moyne Institute of Preventive Medicine, Trinity College Dublin, Dublin, Ireland.
Nancy P KellerDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, USA.
Özgür BayramBiology Department, Maynooth University, Maynooth, Co. Kildare, Ireland. Electronic address: ozgur.bayram@mu.ie.
National University of Ireland, Maynooth · IEUniversity of Macau · MOUniversity of Wisconsin–Madison · USTrinity College Dublin · IE

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007133 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PERNA, NICOLE T · 1985 to 2023
$16.5M
Comprehensive analysis of NRPS-derived metabolomes of three Aspergillus speciesR01GM112739 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KELLER, NANCY P · 2015 to 2023
$2.8M
NIGMS NIH HHS R01 GM112739NIGMS NIH HHS T32 GM007133
6 · The paper itself

Abstract

The filamentous fungus Aspergillus flavus is a plant and human pathogen predominantly found in the soil as spores or sclerotia and is capable of producing various secondary metabolites (SM) such as the carcinogenic mycotoxin aflatoxin. Recently, we have discovered a novel nuclear chromatin binding complex (KERS) that contains the JARID1-type histone demethylase KdmB, a putative cohesion acetyl transferase EcoA, a class I type histone deacetylase RpdA and the PHD ring finger reader protein SntB in the model filamentous fungus Aspergillus nidulans. Here, we show the presence of the KERS complex in A. flavus by immunoprecipitation-coupled mass spectrometry and constructed kdmBΔ and rpdAΔ strains to study their roles in fungal development, SM production and histone post-translational modifications (HPTMs). We found that KdmB and RpdA couple the regulation of SM gene clusters with fungal light-responses and HPTMs. KdmB and RpdA have opposing roles in light-induced asexual conidiation, while both factors are positive regulators of sclerotia development through the nsdC and nsdD pathway. KdmB and RpdA are essential for the productions of aflatoxin (similar to findings for SntB) as well as cyclopiazonic acid, ditryptophenaline and leporin B through controlling the respective SM biosynthetic gene clusters. We further show that both KdmB and RpdA regulate H3K4me3 and H3K9me3 levels, while RpdA also acts on H3K14ac levels in nuclear extracts. Therefore, the chromatin modifiers KdmB and RpdA of the KERS complex are key regulators for fungal development and SM metabolism in A. flavus.

Indexed as

AflatoxinsAspergillus flavusChromatinFungal ProteinsGene Expression Regulation, FungalHumansSecondary MetabolismVirulenceAflatoxinsChromatinFungal Proteins

Identifiers

PMID37666447
PMCPMC10841535
OpenAlexW4386400733

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.