Evidence map›Paper›PMID 37665467›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Probing Antibody Structures by Hydrogen/Deuterium Exchange Mass Spectrometry.

Zuzana Kalaninová, Lukáš Fojtík, Josef Chmelík, Petr Novák, Michael Volný, Petr Man

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zuzana KalaninováBioCeV - Institute of Microbiology of the Czech Academy of Sciences, Vestec, Czech Republic.ORCID 0000-0002-1399-6404
Lukáš FojtíkBioCeV - Institute of Microbiology of the Czech Academy of Sciences, Vestec, Czech Republic.ORCID 0000-0003-4658-8025
Josef ChmelíkInstitute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0002-0305-9345
Petr NovákBioCeV - Institute of Microbiology of the Czech Academy of Sciences, Vestec, Czech Republic.ORCID 0000-0001-8688-529X
Michael VolnýBioCeV - Institute of Microbiology of the Czech Academy of Sciences, Vestec, Czech Republic.ORCID 0000-0001-7456-5408
Petr ManBioCeV - Institute of Microbiology of the Czech Academy of Sciences, Vestec, Czech Republic. pman@biomed.cas.cz.ORCID 0000-0002-1485-2197

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hydrogen/deuterium exchange (HDX) followed by mass spectrometry detection (MS) provides a fast, reliable, and detailed solution for the assessment of a protein structure. It has been widely recognized as an indispensable tool and already approved by several regulatory agencies as a structural technique for the validation of protein biopharmaceuticals, including antibody-based drugs. Antibodies are of a key importance in life and medical sciences but considered to be challenging analytical targets because of their compact structure stabilized by disulfide bonds and due to the presence of glycosylation. Despite these difficulties, there are already numerous excellent studies describing MS-based antibody structure characterization. In this chapter, we describe a universal HDX-MS workflow. Deeper attention is paid to sample handling, optimization procedures, and feasibility stages, as these elements of the HDX experiment are crucial for obtaining reliable detailed and spatially well-resolved information.

Indexed as

AntibodiesHydrogen Deuterium Exchange-Mass SpectrometryDeuteriumHydrogenMass SpectrometryAntibodiesDeuteriumHydrogenAntibodyBiosimilarsHydrogen/deuterium exchangeMass spectrometryProtein structure and dynamicsProteolysis

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.