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ArticleEuropean radiology2024

Natural language processing deep learning models for the differential between high-grade gliomas and metastasis: what if the key is how we report them?

Teodoro Martín-Noguerol, Pilar López-Úbeda, Albert Pons-Escoda, Antonio Luna

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Article in European radiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

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4citing papers in PubMed, 1 pooled it
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Teodoro Martín-NoguerolRadiology Department, MRI Unit, HT Medica, Carmelo Torres 2, 23007, Jaén, Spain. t.martin.f@htime.org.
Pilar López-ÚbedaNLP Department, HT Medica, Jaén, Spain.
Albert Pons-EscodaRadiology Department, Hospital Universitari de Bellvitge, Barcelona, Spain.
Antonio LunaRadiology Department, MRI Unit, HT Medica, Carmelo Torres 2, 23007, Jaén, Spain.

Funding

Ministerio de Ciencia e Innovación PTQ2021-012120
6 · The paper itself

Abstract

objectivesThe differential between high-grade glioma (HGG) and metastasis remains challenging in common radiological practice. We compare different natural language processing (NLP)-based deep learning models to assist radiologists based on data contained in radiology reports.

methodsThis retrospective study included 185 MRI reports between 2010 and 2022 from two different institutions. A total of 117 reports were used for the training and 21 were reserved for the validation set, while the rest were used as a test set. A comparison of the performance of different deep learning models for HGG and metastasis classification has been carried out. Specifically, Convolutional Neural Network (CNN), Bidirectional Long Short-Term Memory (BiLSTM), a hybrid version of BiLSTM and CNN, and a radiology-specific Bidirectional Encoder Representations from Transformers (RadBERT) model were used.

resultsFor the classification of MRI reports, the CNN network provided the best results among all tested, showing a macro-avg precision of 87.32%, a sensitivity of 87.45%, and an F1 score of 87.23%. In addition, our NLP algorithm detected keywords such as tumor, temporal, and lobe to positively classify a radiological report as HGG or metastasis group.

conclusionsA deep learning model based on CNN enables radiologists to discriminate between HGG and metastasis based on MRI reports with high-precision values. This approach should be considered an additional tool in diagnosing these central nervous system lesions. CLINICAL RELEVANCE STATEMENT: The use of our NLP model enables radiologists to differentiate between patients with high-grade glioma and metastasis based on their MRI reports and can be used as an additional tool to the conventional image-based approach for this challenging task. KEY POINTS: • Differential between high-grade glioma and metastasis is still challenging in common radiological practice. • Natural language processing (NLP)-based deep learning models can assist radiologists based on data contained in radiology reports. • We have developed and tested a natural language processing model for discriminating between high-grade glioma and metastasis based on MRI reports that show high precision for this task.

Indexed as

Deep LearningGliomaHumansNatural Language ProcessingNeural Networks, ComputerRetrospective StudiesArtificial intelligenceGliomaMetastasisNatural language processing

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.