Evidence map›Paper›PMID 37665384›Full record

ArticleAMB Express2023

Whole genome sequencing and analysis of selenite-reducing bacteria Bacillus paralicheniformis SR14 in response to different sugar supplements.

Fengqin Wang, Tao Gong, Man Du, Xiao Xiao, Zipeng Jiang, Weilian Hu, Yizhen Wang, Yuanzhi Cheng

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Biodegradation of sodium selenite by a highly tolerant strainCurrent research in microbial sciences · 2025
    Article
  3. Bioremediation Potential ofMicroorganisms · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

Fengqin WangKey Laboratory of Molecular Animal Nutrition, Ministry of Education, Hangzhou, 310058, China.
Tao GongKey Laboratory of Molecular Animal Nutrition, Ministry of Education, Hangzhou, 310058, China.
Man DuKey Laboratory of Molecular Animal Nutrition, Ministry of Education, Hangzhou, 310058, China.
Xiao XiaoKey Laboratory of Molecular Animal Nutrition, Ministry of Education, Hangzhou, 310058, China.
Zipeng JiangKey Laboratory of Molecular Animal Nutrition, Ministry of Education, Hangzhou, 310058, China.
Weilian HuKey Laboratory of Molecular Animal Nutrition, Ministry of Education, Hangzhou, 310058, China.
Yizhen WangKey Laboratory of Molecular Animal Nutrition, Ministry of Education, Hangzhou, 310058, China.
Yuanzhi ChengKey Laboratory of Molecular Animal Nutrition, Ministry of Education, Hangzhou, 310058, China. yzcheng@zju.edu.cn.ORCID http://orcid.org/0000-0002-2549-8605
Ministry of Education of the People's Republic of China · CN

Funding

China Agriculture Research System of MOF and MARA CARS-35Postdoctoral Research Foundation of China 2022M712793Zhejiang Provincial Key R&D Program of China 2021C02008
6 · The paper itself

Abstract

The biosynthetic process of selenium nanoparticles (SeNPs) by specific bacterial strain, whose growth directly affects the synthesis efficiency, has attracted great attentions. We previously reported that Bacillus paralicheniformis SR14, a SeNPs-producing bacteria, could improve intestinal antioxidative function in vitro. To further analyze the biological characteristics of SR14, whole genome sequencing was used to reveal the genetic characteristics in selenite reduction and sugar utilization. The results reviewed that the genome size of SR14 was 4,448,062 bp, with a GC content of 45.95%. A total of 4300 genes into 49 biological pathways was annotated to the KEGG database. EC: 1.1.1.49 (glucose-6-phosphate 1-dehydrogenase) and EC: 5.3.1.9 (glucose-6-phosphate isomerase), were found to play a potential role in glucose degradation and EC:2.7.1.4 (fructokinase) might be involved in the fructose metabolism. Growth profile and selenite-reducing ability of SR14 under different sugar supplements were determined and the results reviewed that glucose had a better promoting effect on the reduction of selenite and growth of bacteria than fructose, sucrose, and maltose. Moreover, RT-qPCR experiment proved that glucose supplement remarkably promoted the expressions of thioredoxin, fumarate reductase, and the glutathione peroxidase in SR14. Analysis of mRNA expression showed levels of glucose-6-phosphate dehydrogenase and fructokinase significantly upregulated under the supplement of glucose. Overall, our data demonstrated the genomic characteristics of SR14 and preliminarily determined that glucose supplement was most beneficial for strain growth and SeNPs synthesis.

Indexed as

Bacillus paralicheniformisSelenite reductionSugar supplementsWhole genome sequence

Identifiers

PMID37665384
PMCPMC10477163
OpenAlexW4386407813

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.