Evidence map›Paper›PMID 37664600›Full record

ArticleiScience2023

Single cell analysis reveals a subset of cytotoxic-like plasmacytoid dendritic cells in people with HIV-1.

Lamin B Cham, Jesper D Gunst, Mariane H Schleimann, Giacomo S Frattari, Miriam Rosas-Umbert, Line K Vibholm, Renée M van der Sluis, Martin R Jakobsen, Rikke Olesen, Lin Lin and 2 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Lamin B ChamDepartment of Infectious Diseases, Aarhus University Hospital, 8200 Aarhus, Denmark.
Jesper D GunstDepartment of Infectious Diseases, Aarhus University Hospital, 8200 Aarhus, Denmark.
Mariane H SchleimannDepartment of Infectious Diseases, Aarhus University Hospital, 8200 Aarhus, Denmark.
Giacomo S FrattariDepartment of Infectious Diseases, Aarhus University Hospital, 8200 Aarhus, Denmark.
Miriam Rosas-UmbertDepartment of Infectious Diseases, Aarhus University Hospital, 8200 Aarhus, Denmark.
Line K VibholmDepartment of Infectious Diseases, Aarhus University Hospital, 8200 Aarhus, Denmark.
Renée M van der SluisDepartment of Biomedicine, Aarhus University, 8000 Aarhus, Denmark.
Martin R JakobsenDepartment of Biomedicine, Aarhus University, 8000 Aarhus, Denmark.
Rikke OlesenDepartment of Infectious Diseases, Aarhus University Hospital, 8200 Aarhus, Denmark.
Lin LinDepartment of Biomedicine, Aarhus University, 8000 Aarhus, Denmark.
Martin TolstrupDepartment of Infectious Diseases, Aarhus University Hospital, 8200 Aarhus, Denmark.
Ole S SøgaardDepartment of Infectious Diseases, Aarhus University Hospital, 8200 Aarhus, Denmark.
Aarhus University · DKAarhus University Hospital · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human plasmacytoid dendritic cells (pDCs) play a central role in initiating and activating host immune responses during infection. To understand how the transcriptome of pDCs is impacted by HIV-1 infection and exogenous stimulation, we isolated pDCs from healthy controls, people with HIV-1 (PWH) before and during toll-like receptor 9 (TLR9) agonist treatment and performed single-cell (sc)-RNA sequencing. Our cluster analysis revealed four pDC clusters: pDC1, pDC2, cytotoxic-like pDC and an exhausted pDC cluster. The inducible cytotoxic-like pDC cluster is characterized by high expression of both antiviral and cytotoxic genes. Further analyses confirmed that cytotoxic-like pDCs are distinct from NK and T cells. Cell-cell communication analysis also demonstrated that cytotoxic-like pDCs exhibit similar incoming and outgoing cellular communicating signals as other pDCs. Thus, our study presents a detailed transcriptomic atlas of pDCs and provides new perspectives on the mechanisms of regulation and function of cytotoxic-like pDCs.

Indexed as

Cell biologyComponents of the immune systemImmunologyTranscriptomics

Identifiers

PMID37664600
PMCPMC10470411
OpenAlexW4385776741

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.